Factsheet for Solyc02g021260.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043852	Potato	nucleus	11.47	41.83
Solyc02g065350.2.1	Tomato	mitochondrion	8.2	32.63
KRG94732	Soybean	nucleus	4.33	22.8
KRH06798	Soybean	cytosol	5.77	20.94
KRH46517	Soybean	nucleus	3.95	20.31
KRH36061	Soybean	golgi, nucleus	5.85	19.9
KRH49477	Soybean	nucleus	4.86	19.88
KRH54937	Soybean	nucleus	4.56	19.61
KRH38154	Soybean	nucleus	5.24	19.17
KRG90691	Soybean	nucleus	3.87	19.1
KRH36062	Soybean	nucleus	5.32	19.07
KRG90686	Soybean	nucleus	6.0	18.37
KRG90690	Soybean	cytosol, mitochondrion, nucleus	4.1	18.12
Solyc01g015210.1.1	Tomato	nucleus	3.87	17.96
KRG99575	Soybean	nucleus	4.63	17.73
Solyc03g042510.1.1	Tomato	nucleus	2.58	17.62
KRG90687	Soybean	nucleus	6.0	17.4
Solyc03g044110.1.1	Tomato	nucleus	4.25	17.34
KRH38192	Soybean	endoplasmic reticulum, golgi	6.76	16.86
KRH46518	Soybean	nucleus	3.64	16.84
Solyc07g054630.2.1	Tomato	nucleus	7.21	16.44
Solyc03g043580.1.1	Tomato	cytosol	4.02	16.41
KRH18416	Soybean	nucleus	3.8	16.34
Solyc08g029090.2.1	Tomato	nucleus	7.21	16.27
Solyc08g068540.2.1	Tomato	nucleus	6.07	16.03
Solyc03g042500.1.1	Tomato	mitochondrion	2.43	15.76
Solyc04g015500.2.1	Tomato	cytosol	2.43	14.75
Solyc01g034190.1.1	Tomato	cytoskeleton, cytosol, nucleus	1.06	14.43
Solyc11g045450.1.1	Tomato	cytosol	2.89	12.79
Solyc03g043570.1.1	Tomato	cytosol	1.21	12.03
Solyc05g017730.1.1	Tomato	cytosol	0.91	10.08
VIT_07s0255g00070.t01	Wine grape	nucleus	2.51	9.43

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4B4X6	PFAM:PF02362
PFscan:PS50863	PANTHER:PTHR31391	PANTHER:PTHR31391:SF45	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc02g021260.1
EnsemblPlants:Solyc02g021260.1.1	UniParc:UPI000276880D	:	:	:	:

Description

No Description!

Coordinates

chr2:+:22388447..22395289

Molecular Weight (calculated)

147511.0 Da

IEP (calculated)

10.456

GRAVY (calculated)

-0.411

Length

1317 amino acids

Sequence
(BLAST)

0001: MASSSSTKNN TVVQSRFIKI ILFPHECIHL SIPHDFERRC CNDILSPVHL EVPTGQVWEV ELRHSEAEIE YPYSSRTFHF HETHHAPIID LSESDVDIME
0101: DTPRRQKLKE KVVDHSLENL CYGQISKRKR HGDDVASPSF TKKVQNCRIH KKDSKSVYDQ NKTVMEKESS TAYQQAKAFK SKNPFIISFM QPSYVSASFN
0201: LSIPLKFARK YFLENNGNLV LRVPGIGSWS VKCTLGMTNG KVGSGWKAFV QDNKLKVGDV CVFEVLKGQL FVDVIIFRAA GSTLMHNIVA EVPRVPCSQP
0301: KVVQTKKSKQ HTGGSYGLNL KIKEEQGEGT EILGHCPSGR GSKRKQPEVD AVVPSFTKKA QNCRIHKKDS KSVYDQNKTV MEKESSTAYQ QAKAFKYKNP
0401: FTISFMQPSY VSASFNLSIP LKFARKYFLE NNGNLVLRVP GIGSWSVKCT LGMTNGKVGS GWKAFVQDNK LKVGDVCVFE VLKGQLFVDV IIFRAAGSTL
0501: MHNIVAEVSR VPYSQPKVVQ TKKSKQHTGG SYGLNLKIKV EQGEGTEILG HCPSGRGSKR KQSEVDAVVP SFTKKAQNCR IHKKDSKSVY DQNKTVMEKE
0601: SSTAYQQAKA FKSKNPFTIS FMQPSYVSAS FNLSIPLKFA RKYFLENNGN LVLRVPGIGS WSVKCTLGMT NGKVGSGWKA FVQDNKLKVG DICVFEVLKG
0701: QLFVDVIIFR VAGSTLMHNI VAEVPRVPCS QPKVVQTKKS KQHTGGSYGL NLKIKEEQGE GTEILGHCPS GRGSKRKQPE VDAVVSSFTR KTKKSGGSCG
0801: LHKKQSKIVY DKNKTVTDKK SSIAYQRAKA FKSKNPFIVS FMQPSYISKH YILKIWSAFA RKYFLENDGN LVLRVSGSGS WSVKCTITTA MIKGGQLFVD
0901: VTIFRAAGSI IVAEVPGRSD RKSKVIKEEH GKGTEIEHSV KVLGHCPLGN DSKRRRPARK AEDVASPSFT RKPKKSGESC RMHKQQTKMV NAKRKTVLDK
1001: EMTIAYQRAK AFRSKNPFVI YFMQPSYVSR PYNLHMTFSY AQKYLWEKCG DLVLRAAGRG SWSVKYDLGL PEGRIRLSWR AFVLDNKLKS GDVCVFELIK
1101: GTQPFLDVII FRANERKPKH TTDGGVSGFR NKIIKTENSV PCPRTKIDHS RKHNLEKKHK GDSDGFITSK VKEELREGTL RHGQQSTSFC MGTVVAKEMV
1201: LAYQKAKAFT SENPFFLSFM QPSYVSLARG PIQLSIASSV ARKFFSTRQS DVVLEVSSKR RWTVKCSVGI KTAKFSCGWK EFVVDNKLKV GDVCIFEWTG
1301: RPNLVFNVII FPSCGGI

Best Arabidopsis Sequence Match ( AT1G49480.3 )
(BLAST)

001: MQMDSAQNQF NKRARLFEDP ELKDAKVIYP SNPESTEPVN KGYGGSTAIQ SFFKESKAEE TPKVLKKRGR KKKNPNPEEV NSSTPGGDDS ENRSKFYESA
101: SARKRTVTAE ERERAVNAAK TFEPTNPYFR VVLRPSYLYR GCIMYLPSGF AEKYLSGISG FIKLQLGEKQ WPVRCLYKAG RAKFSQGWYE FTLENNIGEG
201: DVCVFELLRT RDFVLEVTAF RVNEYV

Arabidopsis Description

REM19B3 domain-containing protein REM19 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.