Factsheet for Solyc02g065350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007199	Potato	nucleus	68.88	68.47
Solyc01g034190.1.1	Tomato	cytoskeleton, cytosol, nucleus	11.18	38.14
Solyc03g042510.1.1	Tomato	nucleus	20.85	35.75
Solyc03g042500.1.1	Tomato	mitochondrion	19.03	31.03
KRH46517	Soybean	nucleus	23.87	30.86
KRG94732	Soybean	nucleus	22.36	29.6
KRG90691	Soybean	nucleus	22.05	27.34
Solyc04g015500.2.1	Tomato	cytosol	17.82	27.19
Solyc03g043580.1.1	Tomato	cytosol	25.98	26.63
Solyc03g044110.1.1	Tomato	nucleus	25.68	26.32
Solyc01g015210.1.1	Tomato	nucleus	22.36	26.06
Solyc11g045450.1.1	Tomato	cytosol	23.26	25.93
KRH06798	Soybean	cytosol	27.19	24.79
KRG99575	Soybean	nucleus	25.68	24.71
KRH46518	Soybean	nucleus	21.15	24.56
KRH54937	Soybean	nucleus	22.66	24.51
KRH49477	Soybean	nucleus	22.96	23.6
KRG90690	Soybean	cytosol, mitochondrion, nucleus	20.54	22.82
Solyc03g043570.1.1	Tomato	cytosol	9.06	22.56
KRH38154	Soybean	nucleus	23.57	21.67
KRH18416	Soybean	nucleus	19.03	20.59
KRH36061	Soybean	golgi, nucleus	21.75	18.6
KRG90686	Soybean	nucleus	22.66	17.44
KRG90687	Soybean	nucleus	23.57	17.18
KRH36062	Soybean	nucleus	18.43	16.62
Solyc08g029090.2.1	Tomato	nucleus	28.1	15.92
Solyc08g068540.2.1	Tomato	nucleus	22.36	14.83
KRH38192	Soybean	endoplasmic reticulum, golgi	23.57	14.77
VIT_07s0255g00070.t01	Wine grape	nucleus	14.5	13.71
Solyc07g054630.2.1	Tomato	nucleus	22.66	12.98
Solyc05g017730.1.1	Tomato	cytosol	4.53	12.61
Solyc02g021260.1.1	Tomato	nucleus, plasma membrane	32.63	8.2

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4B6W9	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31920	PANTHER:PTHR31920:SF26	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc02g065350.2	EnsemblPlants:Solyc02g065350.2.1
UniParc:UPI0002768BE5	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:36550677..36552812

Molecular Weight (calculated)

38193.4 Da

IEP (calculated)

5.957

GRAVY (calculated)

-0.411

Length

331 amino acids

Sequence
(BLAST)

001: MVNKFRRQIG KVSSISYTSQ PKFCKIIFSP HELCRLRIPK GFASRYCKNI LNPVYLEVPN GEVWEVELEH SEGHIWLAEG WKDFSDYYSI RRGNFFMFGY
101: NARSHFNVTI FDFSAAEIEY PPAEIESDDS IDISDVVEYS SEYLSHDPLV KERKRIRQEG EEENDIPVER QTIVIDEEES QLNVVSLVIS EDCEEQQSNI
201: VTSKRKEERD EGTADNYQRA KAFKSKNPFI VSFMHPSYVS KPHALYIPLK FARMYLMRNS GNLVLRVPGK GSWSVKCVML RKDAKVTCGW KAFVLDNKLK
301: YGDVCVFEVI NDTKLSLIDV TIFPGISDGT N

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.