Factsheet for Solyc03g042500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g043570.1.1	Tomato	cytosol	64.53	98.5
Solyc03g042510.1.1	Tomato	nucleus	64.53	67.88
Solyc01g034190.1.1	Tomato	cytoskeleton, cytosol, nucleus	27.59	57.73
Solyc01g015210.1.1	Tomato	nucleus	35.96	25.7
Solyc03g043580.1.1	Tomato	cytosol	40.89	25.7
Solyc03g044110.1.1	Tomato	nucleus	39.9	25.08
Solyc11g045450.1.1	Tomato	cytosol	30.54	20.88
Solyc02g065350.2.1	Tomato	mitochondrion	31.03	19.03
Solyc04g015500.2.1	Tomato	cytosol	20.2	18.89
KRG94732	Soybean	nucleus	22.17	18.0
KRH46517	Soybean	nucleus	22.66	17.97
KRG90690	Soybean	cytosol, mitochondrion, nucleus	24.14	16.44
KRG90691	Soybean	nucleus	20.69	15.73
KRG99575	Soybean	nucleus	22.17	13.08
KRH46518	Soybean	nucleus	18.23	12.98
KRH18416	Soybean	nucleus	18.72	12.42
KRH54937	Soybean	nucleus	17.73	11.76
KRH06798	Soybean	cytosol	20.69	11.57
KRH38154	Soybean	nucleus	20.2	11.39
KRH49477	Soybean	nucleus	17.73	11.18
KRH36062	Soybean	nucleus	19.21	10.63
VIT_07s0255g00070.t01	Wine grape	nucleus	16.75	9.71
KRH36061	Soybean	golgi, nucleus	18.23	9.56
KRG90686	Soybean	nucleus	20.2	9.53
Solyc05g017730.1.1	Tomato	cytosol	5.42	9.24
KRG90687	Soybean	nucleus	18.72	8.37
KRH38192	Soybean	endoplasmic reticulum, golgi	20.69	7.95
Solyc08g029090.2.1	Tomato	nucleus	21.67	7.53
Solyc08g068540.2.1	Tomato	nucleus	18.23	7.41
Solyc07g054630.2.1	Tomato	nucleus	17.24	6.06
Solyc02g021260.1.1	Tomato	nucleus, plasma membrane	15.76	2.43

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.2	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4BFX1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31920	PANTHER:PTHR31920:SF26	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc03g042500.1	EnsemblPlants:Solyc03g042500.1.1	UniParc:UPI0002767F7B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:6858909..6860487

Molecular Weight (calculated)

23353.3 Da

IEP (calculated)

4.127

GRAVY (calculated)

-0.343

Length

203 amino acids

Sequence
(BLAST)

001: MRHLGARPIL RILVVFSKRH CENKFNPVFL EFPHGKAWEV EVDNSQGQIW LAKGWSDFCD YYSISVKSLL MFTYNPRSHF VVAIYDQSTT EIEYPIDQDI
101: ESDEQEEDIL VSQGNANVID EDILILQSNA YVIEEDIPIF QSNANVIKDE KEDIPVNCPQ TNANVFEQHK EVGEANNICE KVVPNNYSSQ YILVDLTGDN
201: PFF

Best Arabidopsis Sequence Match ( AT1G49475.1 )
(BLAST)

001: MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD

Arabidopsis Description

B3 domain-containing protein At1g49475 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.