Factsheet for PGSC0003DMT400043852

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007199	Potato	nucleus	41.55	45.05
PGSC0003DMT400096938	Potato	nucleus	22.16	43.48
KRG94732	Soybean	nucleus	21.33	30.8
KRH46517	Soybean	nucleus	19.94	28.12
PGSC0003DMT400007200	Potato	cytosol	25.21	27.74
PGSC0003DMT400085817	Potato	nucleus	38.5	26.68
PGSC0003DMT400091092	Potato	nucleus	21.61	26.09
KRG90691	Soybean	nucleus	19.11	25.84
KRH49477	Soybean	nucleus	21.61	24.22
PGSC0003DMT400070034	Potato	cytoskeleton, cytosol, nucleus	15.24	24.12
KRH38154	Soybean	nucleus	23.82	23.89
KRH54937	Soybean	nucleus	20.22	23.86
KRH06798	Soybean	cytosol	23.82	23.69
KRH18416	Soybean	nucleus	19.94	23.53
KRG90690	Soybean	cytosol, mitochondrion, nucleus	19.39	23.49
KRG99575	Soybean	nucleus	22.16	23.26
KRH46518	Soybean	nucleus	18.28	23.16
KRH36061	Soybean	golgi, nucleus	18.84	17.57
KRH36062	Soybean	nucleus	17.73	17.44
KRG90686	Soybean	nucleus	20.22	16.98
KRH38192	Soybean	endoplasmic reticulum, golgi	23.82	16.29
KRG90687	Soybean	nucleus	20.22	16.08
VIT_07s0255g00070.t01	Wine grape	nucleus	13.02	13.43
PGSC0003DMT400037688	Potato	nucleus	26.59	12.89
PGSC0003DMT400047299	Potato	nucleus	18.01	12.24
Solyc02g021260.1.1	Tomato	nucleus, plasma membrane	41.83	11.47

Protein Annotations

MapMan:15.5.5.2	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BFA1	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400017022
PGSC:PGSC0003DMG400017022	EnsemblPlants:PGSC0003DMT400043852	PFscan:PS50863	PANTHER:PTHR31391	PANTHER:PTHR31391:SF45	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI00029662A4	SEG:seg	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017022]

Coordinates

chr2:+:11086314..11088387

Molecular Weight (calculated)

41034.9 Da

IEP (calculated)

8.154

GRAVY (calculated)

-0.316

Length

361 amino acids

Sequence
(BLAST)

001: MALSEGFCLG NSSSSSTKNN NVVQPKFYKI ILFQDECIRL RIPKGFVKRC CNNILNPVYL EVPSGQVWEV EVQHSQGQIW LTKGWQDFCD YYSISCGHFL
101: MFGYNARSHF NVTIFDLSAA EIEYPYSLRT FHCHETHHAP ETDLSESNYS FDILEDIPRS QKLKEKVPDM IDHSVENLGD GQFSKRKRHE DDVASPSFTR
201: EGQSRKSLWI HKQESKSVYD QNKTVMDKES TTAYQQAKTF KSKNPFIIVF MQPSYVSAPF NLSIASKFAR KYFLENDGNL VLRVPGSGSW SVKCTIGTAN
301: AKVGSGWKAF VLENKLKVGD VCVFEVLKGQ LFVDVIIFRA AGSTLMHDID NHLAAVKMLK I

Best Arabidopsis Sequence Match ( AT3G18990.1 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.