Factsheet for PGSC0003DMT400096938

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043852	Potato	nucleus	43.48	22.16
PGSC0003DMT400007199	Potato	nucleus	39.13	21.62
PGSC0003DMT400070034	Potato	cytoskeleton, cytosol, nucleus	26.09	21.05
PGSC0003DMT400007200	Potato	cytosol	34.78	19.51
PGSC0003DMT400091092	Potato	nucleus	30.43	18.73
KRH46517	Soybean	nucleus	23.37	16.8
KRH46518	Soybean	nucleus	23.37	15.09
KRG94732	Soybean	nucleus	20.11	14.8
KRG90690	Soybean	cytosol, mitochondrion, nucleus	23.91	14.77
KRG90691	Soybean	nucleus	20.11	13.86
KRH18416	Soybean	nucleus	22.28	13.4
PGSC0003DMT400085817	Potato	nucleus	36.96	13.05
KRG99575	Soybean	nucleus	21.74	11.63
KRH54937	Soybean	nucleus	19.02	11.44
KRH49477	Soybean	nucleus	19.57	11.18
VIT_07s0255g00070.t01	Wine grape	nucleus	21.2	11.14
KRH38154	Soybean	nucleus	21.2	10.83
KRH06798	Soybean	cytosol	20.65	10.47
KRH36062	Soybean	nucleus	19.02	9.54
KRH36061	Soybean	golgi, nucleus	19.57	9.3
KRG90686	Soybean	nucleus	20.65	8.84
KRH38192	Soybean	endoplasmic reticulum, golgi	23.37	8.14
KRG90687	Soybean	nucleus	19.02	7.71
PGSC0003DMT400047299	Potato	nucleus	17.93	6.21
PGSC0003DMT400037688	Potato	nucleus	24.46	6.04

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1DZJ7	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400046509
PGSC:PGSC0003DMG400046509	EnsemblPlants:PGSC0003DMT400096938	PFscan:PS50863	PANTHER:PTHR31920	PANTHER:PTHR31920:SF26	SUPFAM:SSF101936
UniParc:UPI000295E0F3	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400046509]

Coordinates

chr2:+:24265984..24266538

Molecular Weight (calculated)

21368.9 Da

IEP (calculated)

4.565

GRAVY (calculated)

-0.551

Length

184 amino acids

Sequence
(BLAST)

001: MQRIPEEFAR RCCKNMLNPV YLEVPSGQVW EVEVQHSEGQ IWLAKGWEDF CDYYSISCGH FLMFGYNAHS CFDVTIFDLS ATEIEYPYSL RTFHCHETHH
101: VLKSDLSESD DYVYILEDIP RSQKLNEKVP DMVDHSVENL GDGQSSKRKR DEEDVASPSF TRKGQCEDLI GYDLNSMSIL LHNN

Best Arabidopsis Sequence Match ( AT1G49475.1 )
(BLAST)

001: MRNMHTNRRS PGPITSAATQ RRLKPEPEPT VKKFIKIILL SRIIEKMMKV PARFVRFGPK LTDNVTLQTP VGFKRSIRIK RIGDEVWFEK GWSEFAEAHS
101: LSDGHFLFFH YEGDSCFRVV IFDVSASEIE YPLDDTDDNR EEVMDDDEQG FTGFESSDDD GEVVDMDELL KKKKKKPRVN IKSENVIILD

Arabidopsis Description

B3 domain-containing protein At1g49475 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIB4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.