Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70681 | Canola | plasma membrane | 97.79 | 97.79 |
| CDX78677 | Canola | plasma membrane | 97.79 | 97.79 |
| Bra008630.1-P | Field mustard | plasma membrane | 83.98 | 83.06 |
| AT5G16250.1 | Thale cress | plasma membrane | 83.43 | 82.51 |
| AT3G02640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 77.9 | 76.22 |
| VIT_00s0499g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 72.93 | 69.84 |
| GSMUA_Achr2P20850_001 | Banana | plastid | 61.88 | 60.54 |
| GSMUA_Achr10P... | Banana | plastid | 59.67 | 58.06 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 56.35 | 56.67 |
| Bra035348.1-P | Field mustard | extracellular, plasma membrane | 56.91 | 56.28 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 55.25 | 56.18 |
| EES18467 | Sorghum | extracellular, plasma membrane | 48.07 | 52.73 |
| TraesCS2D01G350700.1 | Wheat | plastid | 54.14 | 51.04 |
| TraesCS2B01G371300.1 | Wheat | plastid | 54.14 | 51.04 |
| EES04034 | Sorghum | extracellular, plasma membrane | 45.3 | 50.93 |
| HORVU3Hr1G089620.1 | Barley | extracellular, plasma membrane | 46.96 | 50.9 |
| Zm00001d038647_P001 | Maize | plasma membrane | 46.96 | 50.9 |
| Os01t0896400-01 | Rice | extracellular, plasma membrane | 46.41 | 50.6 |
| TraesCS2A01G353400.1 | Wheat | plastid | 53.59 | 50.52 |
| TraesCS3A01G398800.1 | Wheat | plasma membrane | 46.41 | 50.3 |
| HORVU2Hr1G085690.1 | Barley | plastid | 53.04 | 50.0 |
| TraesCS1A01G325000.1 | Wheat | plasma membrane | 46.41 | 49.7 |
| TraesCS3B01G431100.1 | Wheat | plasma membrane | 46.41 | 49.7 |
| OQU81867 | Sorghum | plastid | 53.04 | 49.48 |
| Zm00001d042527_P001 | Maize | plasma membrane | 44.2 | 49.38 |
| Zm00001d025762_P001 | Maize | plastid | 51.93 | 49.21 |
| TraesCS1D01G325700.1 | Wheat | plasma membrane | 45.86 | 49.11 |
| TraesCS3D01G392800.1 | Wheat | plasma membrane | 45.86 | 49.11 |
| Os05t0507000-01 | Rice | extracellular, plasma membrane | 44.75 | 48.8 |
| Zm00001d003172_P001 | Maize | plastid | 51.93 | 48.7 |
| Zm00001d012165_P001 | Maize | extracellular, plasma membrane | 43.09 | 48.45 |
| Os04t0496300-01 | Rice | plastid | 51.38 | 48.19 |
| TraesCS1B01G338000.1 | Wheat | plasma membrane | 44.75 | 47.93 |
| Os05t0564601-00 | Rice | cytosol, nucleus, plastid | 28.73 | 29.55 |
Protein Annotations
| EnsemblPlants:Bra006345.1 | EnsemblPlants:Bra006345.1-P | EnsemblPlantsGene:Bra006345 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34124 | PANTHER:PTHR34124:SF2 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000253F5F4 | UniProt:M4CQ56 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT5G16250 (E=6e-076) | unknown protein
Coordinates
chrA03:-:3114340..3114885
Molecular Weight (calculated)
19715.2 Da
IEP (calculated)
7.768
GRAVY (calculated)
0.661
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLISSPSVD ESHYHTHKIF LFANYILLGT ASSCIFLTLS LRLIPSVCGF LLILLHATTI AAAISGCTAA SCGKNRWYAA HMVATVLTAI FQGSVSVLIF
101: TNTANFLGSL RSYVREDDAA VILKLCGGLC VAIFCLEWVV LVLGFFLKYF GYVDGGDSNM KRTGKVQSEE NLKEWPLSFQ V
101: TNTANFLGSL RSYVREDDAA VILKLCGGLC VAIFCLEWVV LVLGFFLKYF GYVDGGDSNM KRTGKVQSEE NLKEWPLSFQ V
001: MGFISSSSPV EESHYHTHKI FLFSNYILLG AASSCIFLTL SLRLIPSICG FLLILLHATT IAAAVSGCAA ASCGRNRWYA AHMVATVLTA IFQGSVSVLI
101: FTNTSKFLGS LKSYVREEDA AVILKLGGGL CIVIFCLDWI VLVCAFFLKY YAYVDGGDGV AMKRTGKVQS EENPKDWPWP FQV
101: FTNTSKFLGS LKSYVREEDA AVILKLGGGL CIVIFCLDWI VLVCAFFLKY YAYVDGGDGV AMKRTGKVQS EENPKDWPWP FQV
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9LF03]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.