Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G325700.1 | Wheat | plasma membrane | 96.45 | 96.45 |
| TraesCS1A01G325000.1 | Wheat | plasma membrane | 92.9 | 92.9 |
| EES18467 | Sorghum | extracellular, plasma membrane | 76.92 | 78.79 |
| Zm00001d038647_P001 | Maize | plasma membrane | 77.51 | 78.44 |
| Os05t0507000-01 | Rice | extracellular, plasma membrane | 75.74 | 77.11 |
| TraesCS3B01G431100.1 | Wheat | plasma membrane | 69.82 | 69.82 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 57.99 | 54.44 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 54.44 | 51.69 |
| TraesCS2B01G371300.1 | Wheat | plastid | 53.25 | 46.88 |
| CDX74612 | Canola | extracellular, plasma membrane | 49.11 | 45.36 |
| CDY37661 | Canola | extracellular, plasma membrane | 49.11 | 45.36 |
| Bra035348.1-P | Field mustard | extracellular, plasma membrane | 49.11 | 45.36 |
| PGSC0003DMT400060056 | Potato | plasma membrane | 45.56 | 44.77 |
| Bra006345.1-P | Field mustard | plasma membrane | 47.93 | 44.75 |
| CDX70681 | Canola | plasma membrane | 46.75 | 43.65 |
| CDX78677 | Canola | plasma membrane | 46.75 | 43.65 |
| VIT_00s0499g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 48.52 | 43.39 |
| PGSC0003DMT400041718 | Potato | plasma membrane | 48.52 | 43.39 |
| AT5G16250.1 | Thale cress | plasma membrane | 46.75 | 43.17 |
| PGSC0003DMT400059623 | Potato | plasma membrane | 46.15 | 43.09 |
| Solyc08g014350.1.1 | Tomato | plasma membrane | 46.15 | 43.09 |
| KRH40258 | Soybean | plastid | 47.93 | 43.09 |
| KRH00966 | Soybean | plasma membrane | 47.93 | 42.63 |
| Bra008630.1-P | Field mustard | plasma membrane | 46.15 | 42.62 |
| CDY26511 | Canola | plasma membrane | 46.15 | 42.39 |
| CDX69458 | Canola | plasma membrane | 46.15 | 42.39 |
| AT3G02640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 44.38 | 40.54 |
| AT5G36800.2 | Thale cress | plasma membrane | 49.7 | 38.53 |
| AT5G36710.2 | Thale cress | plasma membrane | 49.7 | 38.53 |
| Solyc05g055680.2.1 | Tomato | plasma membrane | 33.73 | 37.01 |
| CDY36665 | Canola | endoplasmic reticulum, extracellular, plastid | 22.49 | 36.89 |
| Solyc11g008690.1.1 | Tomato | plasma membrane | 48.52 | 35.5 |
| Os05t0564601-00 | Rice | cytosol, nucleus, plastid | 36.09 | 34.66 |
| CDY15808 | Canola | extracellular | 15.98 | 31.76 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G338000.1 | EnsemblPlantsGene:TraesCS1B01G338000 | PANTHER:PTHR34124 | PANTHER:PTHR34124:SF8 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:565919733..565920242
Molecular Weight (calculated)
17363.0 Da
IEP (calculated)
5.966
GRAVY (calculated)
0.688
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGQVAAHR AFLLCNYLLL GAASGCIFLT ISLRLVPSPC GLLLIFLHAL TAVFAAAGCS GSFTTPAAGA GAQHTAHTTG AVLTAIFQGA AAVLAFTRTA
101: DFLTELRSYV REEDGTVIIR LVGGLGAAIF VLEWASLALA FALRLSEDGG EEATDSGEYT KSLPSGYHV
101: DFLTELRSYV REEDGTVIIR LVGGLGAAIF VLEWASLALA FALRLSEDGG EEATDSGEYT KSLPSGYHV
001: MYAYKPQIKV NLSRNTKTNI KTPKKNQSSL LEFEKMGMSK SKGNTHNIFL LCNYILLGSA SSCIFLTISL RLFPSLSGLS LIFLYTLTIA TAVSGCSIFA
101: SSTSATASDR LYGSHMVATV LTAIFQGAVS VLIFTRTGDF LRFLKSYVRE EDGEVILKLS GGLCVLMFCL EWIVLVLAFL LKYSDYLDES VVDDDDFKVR
201: RQEEDLKDWP SYPFQLKI
101: SSTSATASDR LYGSHMVATV LTAIFQGAVS VLIFTRTGDF LRFLKSYVRE EDGEVILKLS GGLCVLMFCL EWIVLVLAFL LKYSDYLDES VVDDDDFKVR
201: RQEEDLKDWP SYPFQLKI
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LDP3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.