Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69458 | Canola | plasma membrane | 87.98 | 87.5 |
| CDY26511 | Canola | plasma membrane | 87.98 | 87.5 |
| Bra008630.1-P | Field mustard | plasma membrane | 87.43 | 87.43 |
| CDX70681 | Canola | plasma membrane | 83.61 | 84.53 |
| Bra006345.1-P | Field mustard | plasma membrane | 82.51 | 83.43 |
| CDX78677 | Canola | plasma membrane | 82.51 | 83.43 |
| AT3G02640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 77.6 | 76.76 |
| CDY36665 | Canola | endoplasmic reticulum, extracellular, plastid | 43.17 | 76.7 |
| VIT_00s0499g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 75.96 | 73.55 |
| CDY15808 | Canola | extracellular | 33.33 | 71.76 |
| GSMUA_Achr2P20850_001 | Banana | plastid | 62.84 | 62.16 |
| GSMUA_Achr10P... | Banana | plastid | 60.66 | 59.68 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 57.38 | 58.33 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 55.19 | 56.74 |
| HORVU2Hr1G085690.1 | Barley | plastid | 55.19 | 52.6 |
| TraesCS2D01G350700.1 | Wheat | plastid | 55.19 | 52.6 |
| TraesCS2B01G371300.1 | Wheat | plastid | 55.19 | 52.6 |
| TraesCS2A01G353400.1 | Wheat | plastid | 54.64 | 52.08 |
| Os04t0496300-01 | Rice | plastid | 54.64 | 51.81 |
| EES18467 | Sorghum | extracellular, plasma membrane | 46.45 | 51.52 |
| EES04034 | Sorghum | extracellular, plasma membrane | 44.81 | 50.93 |
| Zm00001d003172_P001 | Maize | plastid | 53.55 | 50.78 |
| Zm00001d025762_P001 | Maize | plastid | 52.46 | 50.26 |
| OQU81867 | Sorghum | plastid | 53.01 | 50.0 |
| Os01t0896400-01 | Rice | extracellular, plasma membrane | 45.36 | 50.0 |
| Zm00001d038647_P001 | Maize | plasma membrane | 45.36 | 49.7 |
| Zm00001d012165_P001 | Maize | extracellular, plasma membrane | 43.72 | 49.69 |
| Zm00001d042527_P001 | Maize | plasma membrane | 43.72 | 49.38 |
| HORVU3Hr1G089620.1 | Barley | extracellular, plasma membrane | 44.81 | 49.1 |
| Os05t0507000-01 | Rice | extracellular, plasma membrane | 44.26 | 48.8 |
| TraesCS3A01G398800.1 | Wheat | plasma membrane | 44.26 | 48.5 |
| AT5G36800.2 | Thale cress | plasma membrane | 57.38 | 48.17 |
| AT5G36710.2 | Thale cress | plasma membrane | 57.38 | 48.17 |
| TraesCS1D01G325700.1 | Wheat | plasma membrane | 44.26 | 47.93 |
| TraesCS3B01G431100.1 | Wheat | plasma membrane | 44.26 | 47.93 |
| TraesCS3D01G392800.1 | Wheat | plasma membrane | 43.72 | 47.34 |
| TraesCS1B01G338000.1 | Wheat | plasma membrane | 43.17 | 46.75 |
| TraesCS1A01G325000.1 | Wheat | plasma membrane | 42.62 | 46.15 |
| Os05t0564601-00 | Rice | cytosol, nucleus, plastid | 27.32 | 28.41 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831485 | UniProt:A0A178UQP5 | ProteinID:AED92265.1 | EMBL:AK227420 | ArrayExpress:AT5G16250 |
| EnsemblPlantsGene:AT5G16250 | RefSeq:AT5G16250 | TAIR:AT5G16250 | RefSeq:AT5G16250-TAIR-G | EnsemblPlants:AT5G16250.1 | TAIR:AT5G16250.1 |
| Unigene:At.22180 | ProteinID:CAC01866.1 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_197129.1 | ProteinID:OAO96128.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR34124 | PANTHER:PTHR34124:SF2 | UniProt:Q9LF03 | TMHMM:TMhelix | UniParc:UPI000009D8E1 |
| SEG:seg | : | : | : | : | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9LF03]
Coordinates
chr5:-:5310052..5310951
Molecular Weight (calculated)
19959.5 Da
IEP (calculated)
8.052
GRAVY (calculated)
0.630
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFISSSSPV EESHYHTHKI FLFSNYILLG AASSCIFLTL SLRLIPSICG FLLILLHATT IAAAVSGCAA ASCGRNRWYA AHMVATVLTA IFQGSVSVLI
101: FTNTSKFLGS LKSYVREEDA AVILKLGGGL CIVIFCLDWI VLVCAFFLKY YAYVDGGDGV AMKRTGKVQS EENPKDWPWP FQV
101: FTNTSKFLGS LKSYVREEDA AVILKLGGGL CIVIFCLDWI VLVCAFFLKY YAYVDGGDGV AMKRTGKVQS EENPKDWPWP FQV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.