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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • endoplasmic reticulum 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Predotar:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G350700.1 Wheat plastid 97.92 97.92
TraesCS2B01G371300.1 Wheat plastid 97.92 97.92
TraesCS2A01G353400.1 Wheat plastid 96.88 96.88
Os04t0496300-01 Rice plastid 92.71 92.23
Zm00001d025762_P001 Maize plastid 90.62 91.1
OQU81867 Sorghum plastid 91.67 90.72
Zm00001d003172_P001 Maize plastid 91.15 90.67
GSMUA_Achr10P... Banana plastid 61.46 63.44
GSMUA_Achr2P20850_001 Banana plastid 59.9 62.16
VIT_00s0499g00020.t01 Wine grape endoplasmic reticulum, plasma membrane, plastid 55.21 56.08
AT5G16250.1 Thale cress plasma membrane 52.6 55.19
Bra008630.1-P Field mustard plasma membrane 51.56 54.1
CDX69458 Canola plasma membrane 51.56 53.8
CDY26511 Canola plasma membrane 51.04 53.26
KRH40258 Soybean plastid 52.08 53.19
Bra006345.1-P Field mustard plasma membrane 50.0 53.04
PGSC0003DMT400041718 Potato plasma membrane 52.08 52.91
KRH00966 Soybean plasma membrane 52.08 52.63
CDX70681 Canola plasma membrane 49.48 52.49
AT3G02640.1 Thale cress endoplasmic reticulum, plasma membrane, vacuole 50.52 52.43
CDX78677 Canola plasma membrane 48.96 51.93
PGSC0003DMT400060056 Potato plasma membrane 46.35 51.74
HORVU3Hr1G089620.1 Barley extracellular, plasma membrane 44.27 50.9
Solyc05g055680.2.1 Tomato plasma membrane 40.62 50.65
CDY36665 Canola endoplasmic reticulum, extracellular, plastid 26.56 49.51
Bra035348.1-P Field mustard extracellular, plasma membrane 44.79 46.99
CDX74612 Canola extracellular, plasma membrane 44.27 46.45
CDY37661 Canola extracellular, plasma membrane 44.27 46.45
PGSC0003DMT400059623 Potato plasma membrane 42.71 45.3
Solyc08g014350.1.1 Tomato plasma membrane 42.71 45.3
Solyc11g008690.1.1 Tomato plasma membrane 51.04 42.42
CDY15808 Canola extracellular 18.75 42.35
AT5G36800.2 Thale cress plasma membrane 42.71 37.61
AT5G36710.2 Thale cress plasma membrane 42.71 37.61
Protein Annotations
EnsemblPlants:HORVU2Hr1G085690.1EnsemblPlantsGene:HORVU2Hr1G085690GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR34124
PANTHER:PTHR34124:SF2SEG:segTMHMM:TMhelixUniParc:UPI000B47DE04UniProt:A0A287IRL6MapMan:35.2
Description
No Description!
Coordinates
chrchr2H:-:619596531..619597651
Molecular Weight (calculated)
20221.8 Da
IEP (calculated)
8.935
GRAVY (calculated)
0.570
Length
192 amino acids
Sequence
(BLAST)
001: MGLSVIAPPA GDSASPAHRR ARRAFLVSNY MILGAASGCG FLTLSLRLVP SVNGFLLILL HALTVAAAVA GCAVIAAPDP PRGRVYTAHM SGTVVVSILQ
101: GAAAVLAFSR TSEFLVDGLR SYVREEDGAV ILRMIGGLGI AIFCLEWVAL ALAFVLRYYA YVDRECGGNP MRRSAKVGGE DGAGNWPWPF QV
Best Arabidopsis Sequence Match ( AT5G16250.1 )
(BLAST)
001: MGFISSSSPV EESHYHTHKI FLFSNYILLG AASSCIFLTL SLRLIPSICG FLLILLHATT IAAAVSGCAA ASCGRNRWYA AHMVATVLTA IFQGSVSVLI
101: FTNTSKFLGS LKSYVREEDA AVILKLGGGL CIVIFCLDWI VLVCAFFLKY YAYVDGGDGV AMKRTGKVQS EENPKDWPWP FQV
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9LF03]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.