Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74612 | Canola | extracellular, plasma membrane | 97.27 | 97.27 |
| Bra035348.1-P | Field mustard | extracellular, plasma membrane | 96.72 | 96.72 |
| AT5G36800.2 | Thale cress | plasma membrane | 87.98 | 73.85 |
| AT5G36710.2 | Thale cress | plasma membrane | 87.98 | 73.85 |
| KRH40258 | Soybean | plastid | 59.02 | 57.45 |
| KRH00966 | Soybean | plasma membrane | 58.47 | 56.32 |
| CDY26511 | Canola | plasma membrane | 56.28 | 55.98 |
| CDX69458 | Canola | plasma membrane | 55.74 | 55.43 |
| CDY36665 | Canola | endoplasmic reticulum, extracellular, plastid | 31.15 | 55.34 |
| CDX78677 | Canola | plasma membrane | 54.64 | 55.25 |
| CDX70681 | Canola | plasma membrane | 54.64 | 55.25 |
| GSMUA_Achr2P20850_001 | Banana | plastid | 54.1 | 53.51 |
| GSMUA_Achr10P... | Banana | plastid | 54.1 | 53.23 |
| EES04034 | Sorghum | extracellular, plasma membrane | 45.9 | 52.17 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 50.82 | 51.67 |
| Zm00001d012165_P001 | Maize | extracellular, plasma membrane | 44.81 | 50.93 |
| Zm00001d038647_P001 | Maize | plasma membrane | 46.45 | 50.9 |
| EES18467 | Sorghum | extracellular, plasma membrane | 45.36 | 50.3 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 48.63 | 50.0 |
| TraesCS3B01G431100.1 | Wheat | plasma membrane | 45.9 | 49.7 |
| HORVU3Hr1G089620.1 | Barley | extracellular, plasma membrane | 45.36 | 49.7 |
| Os05t0507000-01 | Rice | extracellular, plasma membrane | 44.81 | 49.4 |
| Zm00001d042527_P001 | Maize | plasma membrane | 43.72 | 49.38 |
| TraesCS1A01G325000.1 | Wheat | plasma membrane | 45.36 | 49.11 |
| TraesCS1B01G338000.1 | Wheat | plasma membrane | 45.36 | 49.11 |
| TraesCS1D01G325700.1 | Wheat | plasma membrane | 45.36 | 49.11 |
| TraesCS3D01G392800.1 | Wheat | plasma membrane | 45.36 | 49.11 |
| TraesCS3A01G398800.1 | Wheat | plasma membrane | 44.81 | 49.1 |
| Os01t0896400-01 | Rice | extracellular, plasma membrane | 44.26 | 48.8 |
| CDY15808 | Canola | extracellular | 21.31 | 45.88 |
| TraesCS2B01G371300.1 | Wheat | plastid | 46.99 | 44.79 |
| TraesCS2D01G350700.1 | Wheat | plastid | 46.99 | 44.79 |
| TraesCS2A01G353400.1 | Wheat | plastid | 46.45 | 44.27 |
| HORVU2Hr1G085690.1 | Barley | plastid | 46.45 | 44.27 |
| Zm00001d003172_P001 | Maize | plastid | 46.45 | 44.04 |
| Zm00001d025762_P001 | Maize | plastid | 45.9 | 43.98 |
| OQU81867 | Sorghum | plastid | 46.45 | 43.81 |
| Os04t0496300-01 | Rice | plastid | 45.36 | 43.01 |
| Os05t0564601-00 | Rice | cytosol, nucleus, plastid | 27.87 | 28.98 |
Protein Annotations
| EnsemblPlants:CDY37661 | EnsemblPlantsGene:GSBRNA2T00064546001 | GO:A0A078HJ14 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34124 | PANTHER:PTHR34124:SF2 | PFscan:PS51257 | ProteinID:CDY37661 | ProteinID:CDY37661.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EB9380 | UniProt:A0A078HJ14 | MapMan:35.2 | : | : |
Description
BnaC04g30030DBnaC04g30030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ14]
Coordinates
chrLK032405:-:274199..275010
Molecular Weight (calculated)
20020.6 Da
IEP (calculated)
7.338
GRAVY (calculated)
0.673
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGISRSKGNT HNIFLLCNYI LLGSASSCIF LTISLRLFPS LSGLSLIFLH TLTIATAVTG CSVFASSTAA TTSDRLYGAH MVATVLAAIF QGAVSVLIFT
101: RTGDFLRVLK SYVLVEDGAV ILKLAGGLCI LMFCLEWVVL VLAFLLKYSD YLDESVVDDD GSKFQRQKED LKDWPSYPFQ LKL
101: RTGDFLRVLK SYVLVEDGAV ILKLAGGLCI LMFCLEWVVL VLAFLLKYSD YLDESVVDDD GSKFQRQKED LKDWPSYPFQ LKL
001: MYAYKPQIKV NLSRNTKTNI KTPKKNQSSL LEFEKMGMSK SKGNTHNIFL LCNYILLGSA SSCIFLTISL RLFPSLSGLS LIFLYTLTIA TAVSGCSIFA
101: SSTSATASDR LYGSHMVATV LTAIFQGAVS VLIFTRTGDF LRFLKSYVRE EDGEVILKLS GGLCVLMFCL EWIVLVLAFL LKYSDYLDES VVDDDDFKVR
201: RQEEDLKDWP SYPFQLKI
101: SSTSATASDR LYGSHMVATV LTAIFQGAVS VLIFTRTGDF LRFLKSYVRE EDGEVILKLS GGLCVLMFCL EWIVLVLAFL LKYSDYLDES VVDDDDFKVR
201: RQEEDLKDWP SYPFQLKI
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LDP3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.