Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G36800.2 | Thale cress | plasma membrane | 100.0 | 100.0 |
| Bra035348.1-P | Field mustard | extracellular, plasma membrane | 74.31 | 88.52 |
| CDX74612 | Canola | extracellular, plasma membrane | 74.31 | 88.52 |
| CDY37661 | Canola | extracellular, plasma membrane | 73.85 | 87.98 |
| AT5G16250.1 | Thale cress | plasma membrane | 48.17 | 57.38 |
| KRH40258 | Soybean | plastid | 49.08 | 56.91 |
| KRH00966 | Soybean | plasma membrane | 48.62 | 55.79 |
| GSMUA_Achr10P... | Banana | plastid | 46.33 | 54.3 |
| AT3G02640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 45.41 | 53.51 |
| GSMUA_Achr2P20850_001 | Banana | plastid | 45.41 | 53.51 |
| EES18467 | Sorghum | extracellular, plasma membrane | 39.45 | 52.12 |
| Zm00001d038647_P001 | Maize | plasma membrane | 39.91 | 52.1 |
| EES04034 | Sorghum | extracellular, plasma membrane | 37.61 | 50.93 |
| Os05t0507000-01 | Rice | extracellular, plasma membrane | 38.53 | 50.6 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 41.28 | 50.56 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 41.74 | 50.56 |
| TraesCS1B01G338000.1 | Wheat | plasma membrane | 38.53 | 49.7 |
| TraesCS1D01G325700.1 | Wheat | plasma membrane | 38.53 | 49.7 |
| Zm00001d012165_P001 | Maize | extracellular, plasma membrane | 36.7 | 49.69 |
| TraesCS3B01G431100.1 | Wheat | plasma membrane | 38.07 | 49.11 |
| TraesCS1A01G325000.1 | Wheat | plasma membrane | 38.07 | 49.11 |
| HORVU3Hr1G089620.1 | Barley | extracellular, plasma membrane | 37.61 | 49.1 |
| TraesCS3D01G392800.1 | Wheat | plasma membrane | 37.61 | 48.52 |
| TraesCS3A01G398800.1 | Wheat | plasma membrane | 37.16 | 48.5 |
| Zm00001d042527_P001 | Maize | plasma membrane | 35.78 | 48.15 |
| Os01t0896400-01 | Rice | extracellular, plasma membrane | 36.24 | 47.59 |
| Os04t0496300-01 | Rice | plastid | 38.99 | 44.04 |
| Zm00001d003172_P001 | Maize | plastid | 38.99 | 44.04 |
| OQU81867 | Sorghum | plastid | 38.99 | 43.81 |
| Zm00001d025762_P001 | Maize | plastid | 38.07 | 43.46 |
| TraesCS2B01G371300.1 | Wheat | plastid | 38.07 | 43.23 |
| TraesCS2D01G350700.1 | Wheat | plastid | 38.07 | 43.23 |
| TraesCS2A01G353400.1 | Wheat | plastid | 37.61 | 42.71 |
| HORVU2Hr1G085690.1 | Barley | plastid | 37.61 | 42.71 |
| Os05t0564601-00 | Rice | cytosol, nucleus, plastid | 26.61 | 32.95 |
Protein Annotations
| MapMan:35.2 | EntrezGene:833636 | EntrezGene:833647 | ProteinID:ANM69701.1 | ProteinID:ANM69801.1 | ArrayExpress:AT5G36710 |
| EnsemblPlantsGene:AT5G36710 | RefSeq:AT5G36710 | TAIR:AT5G36710 | RefSeq:AT5G36710-TAIR-G | EnsemblPlants:AT5G36710.2 | Unigene:At.30536 |
| Unigene:At.71644 | ProteinID:BAA97553.1 | ProteinID:BAA98058.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_001331361.1 | RefSeq:NP_001331454.1 | PANTHER:PTHR34124 | PANTHER:PTHR34124:SF2 | UniProt:Q9LDP3 | TMHMM:TMhelix |
| UniParc:UPI000009CEEC | SEG:seg | : | : | : | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LDP3]
Coordinates
chr5:-:14424735..14426217
Molecular Weight (calculated)
24486.9 Da
IEP (calculated)
8.447
GRAVY (calculated)
0.256
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MYAYKPQIKV NLSRNTKTNI KTPKKNQSSL LEFEKMGMSK SKGNTHNIFL LCNYILLGSA SSCIFLTISL RLFPSLSGLS LIFLYTLTIA TAVSGCSIFA
101: SSTSATASDR LYGSHMVATV LTAIFQGAVS VLIFTRTGDF LRFLKSYVRE EDGEVILKLS GGLCVLMFCL EWIVLVLAFL LKYSDYLDES VVDDDDFKVR
201: RQEEDLKDWP SYPFQLKI
101: SSTSATASDR LYGSHMVATV LTAIFQGAVS VLIFTRTGDF LRFLKSYVRE EDGEVILKLS GGLCVLMFCL EWIVLVLAFL LKYSDYLDES VVDDDDFKVR
201: RQEEDLKDWP SYPFQLKI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.