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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • plasma membrane 5
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400059623 Potato plasma membrane 94.48 94.48
KRH40258 Soybean plastid 58.56 56.38
KRH00966 Soybean plasma membrane 57.46 54.74
GSMUA_Achr11P... Banana endoplasmic reticulum, plasma membrane, plastid 49.72 50.56
GSMUA_Achr10P... Banana plastid 51.93 50.54
GSMUA_Achr11P... Banana endoplasmic reticulum, plasma membrane 49.72 50.0
Solyc05g055680.2.1 Tomato plasma membrane 42.54 50.0
GSMUA_Achr2P20850_001 Banana plastid 50.28 49.19
Zm00001d038647_P001 Maize plasma membrane 44.75 48.5
EES18467 Sorghum extracellular, plasma membrane 43.09 47.27
TraesCS1A01G325000.1 Wheat plasma membrane 43.65 46.75
TraesCS1D01G325700.1 Wheat plasma membrane 43.65 46.75
HORVU3Hr1G089620.1 Barley extracellular, plasma membrane 43.09 46.71
TraesCS1B01G338000.1 Wheat plasma membrane 43.09 46.15
TraesCS3A01G398800.1 Wheat plasma membrane 42.54 46.11
EES04034 Sorghum extracellular, plasma membrane 40.88 45.96
Zm00001d042527_P001 Maize plasma membrane 40.88 45.68
TraesCS3B01G431100.1 Wheat plasma membrane 42.54 45.56
Zm00001d012165_P001 Maize extracellular, plasma membrane 40.33 45.34
Os05t0507000-01 Rice extracellular, plasma membrane 41.44 45.18
TraesCS3D01G392800.1 Wheat plasma membrane 41.99 44.97
Os01t0896400-01 Rice extracellular, plasma membrane 40.88 44.58
Solyc11g008690.1.1 Tomato plasma membrane 55.25 43.29
Os04t0496300-01 Rice plastid 45.86 43.01
TraesCS2B01G371300.1 Wheat plastid 45.3 42.71
TraesCS2D01G350700.1 Wheat plastid 45.3 42.71
HORVU2Hr1G085690.1 Barley plastid 45.3 42.71
TraesCS2A01G353400.1 Wheat plastid 44.75 42.19
Zm00001d003172_P001 Maize plastid 44.75 41.97
OQU81867 Sorghum plastid 44.75 41.75
Zm00001d025762_P001 Maize plastid 43.65 41.36
Os05t0564601-00 Rice cytosol, nucleus, plastid 28.18 28.98
Protein Annotations
EnsemblPlants:Solyc08g014350.1.1EnsemblPlantsGene:Solyc08g014350.1GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR34124
PANTHER:PTHR34124:SF5SEG:segTMHMM:TMhelixUniParc:UPI000276B296UniProt:K4CJ68MapMan:35.2
Description
No Description!
Coordinates
chr8:-:4185941..4186486
Molecular Weight (calculated)
19823.4 Da
IEP (calculated)
7.457
GRAVY (calculated)
0.661
Length
181 amino acids
Sequence
(BLAST)
001: MGALPIISST EFKSHCHPSH QIFRLANYIL LSASSSCIFL TLSLRLIPSL YGGLFILLHI LTIAGAVLGC TDTATLAGSN NWYAIHMIST VLTAIFQGSS
101: SVLIFTKSYD FLGELKSYVR EDNGVVILKL IGGLSILIFC LEWVVLLLAF ILRYNAFVEG NNSTNSKQEE TLKGYPCPIQ V
Best Arabidopsis Sequence Match ( AT5G16250.1 )
(BLAST)
001: MGFISSSSPV EESHYHTHKI FLFSNYILLG AASSCIFLTL SLRLIPSICG FLLILLHATT IAAAVSGCAA ASCGRNRWYA AHMVATVLTA IFQGSVSVLI
101: FTNTSKFLGS LKSYVREEDA AVILKLGGGL CIVIFCLDWI VLVCAFFLKY YAYVDGGDGV AMKRTGKVQS EENPKDWPWP FQV
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9LF03]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.