Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G23280.1 | KRH10001 | AT3G13710.1 | 21798944 |
AT3G23280.1 | KRH23330 | AT3G13710.1 | 21798944 |
AT3G23280.1 | KRH44167 | AT3G13710.1 | 21798944 |
AT3G23280.1 | KRH47141 | AT3G13710.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH34390 | Soybean | cytosol | 93.65 | 93.86 |
CDY68171 | Canola | cytosol | 11.82 | 60.67 |
VIT_05s0049g01160.t01 | Wine grape | nucleus | 64.99 | 59.4 |
CDY71158 | Canola | nucleus | 42.45 | 57.57 |
Bra014934.1-P | Field mustard | nucleus | 55.14 | 56.25 |
Solyc09g090160.2.1 | Tomato | nucleus | 60.39 | 55.09 |
AT3G23280.1 | Thale cress | nucleus | 55.14 | 54.55 |
PGSC0003DMT400044357 | Potato | nucleus | 59.74 | 54.49 |
Bra028419.1-P | Field mustard | nucleus | 45.08 | 54.07 |
CDY08992 | Canola | cytosol | 51.86 | 53.74 |
CDX67415 | Canola | cytosol | 44.64 | 53.4 |
AT4G14365.1 | Thale cress | cytosol | 43.76 | 53.19 |
CDY49072 | Canola | cytosol | 43.98 | 52.62 |
CDX77533 | Canola | cytosol | 39.61 | 50.84 |
Bra014932.1-P | Field mustard | cytosol | 39.61 | 50.84 |
CDX85079 | Canola | cytosol | 39.17 | 50.28 |
CDY03596 | Canola | cytosol | 35.23 | 49.39 |
CDY08997 | Canola | cytosol | 40.48 | 49.2 |
CDX85082 | Canola | nucleus | 54.92 | 49.02 |
Bra014247.1-P | Field mustard | nucleus | 31.29 | 47.35 |
TraesCS1B01G107100.1 | Wheat | cytosol | 51.86 | 46.11 |
CDY62836 | Canola | nucleus | 41.14 | 45.52 |
TraesCS1A01G088100.2 | Wheat | cytosol | 51.64 | 45.47 |
Os07t0446100-01 | Rice | cytosol | 50.98 | 45.42 |
HORVU1Hr1G019320.3 | Barley | cytosol | 52.3 | 44.84 |
Zm00001d019547_P002 | Maize | cytosol | 50.55 | 44.68 |
EER98436 | Sorghum | cytosol | 50.11 | 44.38 |
TraesCS1D01G089400.1 | Wheat | cytosol | 51.64 | 42.75 |
GSMUA_Achr5P14580_001 | Banana | cytosol | 43.54 | 38.49 |
HORVU3Hr1G065130.2 | Barley | cytosol | 42.89 | 38.36 |
CDY35522 | Canola | cytosol | 45.08 | 36.72 |
GSMUA_Achr4P18160_001 | Banana | golgi, mitochondrion, nucleus, plastid | 45.08 | 33.88 |
Bra023739.1-P | Field mustard | vacuole | 44.64 | 33.83 |
Protein Annotations
Gene3D:1.25.40.20 | EntrezGene:100805974 | MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | EMBL:ACUP02012753 | InterPro:Ankyrin_rpt |
InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | EnsemblPlantsGene:GLYMA_20G209400 | GO:GO:0000151 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | InterPro:IPR001841 | InterPro:IPR002110 |
InterPro:IPR013083 | InterPro:IPR020683 | InterPro:IPR036770 | UniProt:K7N4T1 | EnsemblPlants:KRG92416 | ProteinID:KRG92416 |
ProteinID:KRG92416.1 | PFAM:PF13857 | PFAM:PF13920 | PFscan:PS50088 | PFscan:PS50089 | PFscan:PS50297 |
PANTHER:PTHR44837 | PANTHER:PTHR44837:SF1 | SMART:SM00184 | SMART:SM00248 | SUPFAM:SSF48403 | SUPFAM:SSF57850 |
UniParc:UPI0002951FE5 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr20:-:44560703..44566369
Molecular Weight (calculated)
49037.1 Da
IEP (calculated)
6.107
GRAVY (calculated)
-0.289
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGQSKDEL LYQQVSYGNA EGIKTLHREG AGLEWRDKDA KTPLIVACMN PQLYNVAKTL IELGANVNAF RPGRHGGTPL HHAAKRDFDS IVNLLLLHGA
101: NPLVLNDDCL TALEVARAKG HSNVVRTIES HLCLFSGWLR EFHGPGFLEV VAPQLVSKKV WVVVLPVGSR TLAKPYKLEL AIYSRLQDAQ PHTVIGLWNA
201: DLQEPKLHQS DPSVTVVNHT TKTRIKLGPA SENDKQQLTW FSNACKGIPQ ASPAFLQNNV PTGPPTAPPD AEDTELAMAI SASLQSAMQE RPPFPDTQPS
301: FDASSSSSAV NTDNHGFLGT PNPNTSDSEL VQEANPDGNT QHLQSCVNPS ALDLNPSAPP ITNEIPGDGP IQYPSIDLSP VDMASPDAEK LLKEGEKSAG
401: GSSSSCVICL DAPAEGACIP CGHVAGCMSC LNEVKSKKWG CPVCRAKIDQ VIKLYHV
101: NPLVLNDDCL TALEVARAKG HSNVVRTIES HLCLFSGWLR EFHGPGFLEV VAPQLVSKKV WVVVLPVGSR TLAKPYKLEL AIYSRLQDAQ PHTVIGLWNA
201: DLQEPKLHQS DPSVTVVNHT TKTRIKLGPA SENDKQQLTW FSNACKGIPQ ASPAFLQNNV PTGPPTAPPD AEDTELAMAI SASLQSAMQE RPPFPDTQPS
301: FDASSSSSAV NTDNHGFLGT PNPNTSDSEL VQEANPDGNT QHLQSCVNPS ALDLNPSAPP ITNEIPGDGP IQYPSIDLSP VDMASPDAEK LLKEGEKSAG
401: GSSSSCVICL DAPAEGACIP CGHVAGCMSC LNEVKSKKWG CPVCRAKIDQ VIKLYHV
001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV
Arabidopsis Description
XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.