CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97509
CDY23634
CDY37483
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	CDX97509	AT3G13710.1	21798944
AT3G23280.1	CDY23634	AT3G13710.1	21798944
AT3G23280.1	CDY37483	AT3G13710.1	21798944
AT3G23280.1	CDY51735	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71158	Canola	nucleus	58.05	75.96
CDX85082	Canola	nucleus	82.31	70.9
AT3G23280.1	Thale cress	nucleus	72.56	69.26
CDY35522	Canola	cytosol	81.86	64.35
CDY68171	Canola	cytosol	12.93	64.04
CDY08997	Canola	cytosol	54.42	63.83
CDY62836	Canola	nucleus	58.05	61.99
CDX77533	Canola	cytosol	49.89	61.8
CDX67415	Canola	cytosol	53.29	61.52
CDX85079	Canola	cytosol	49.43	61.24
CDY49072	Canola	cytosol	52.83	60.99
Bra023739.1-P	Field mustard	vacuole	81.86	59.87
CDY03596	Canola	cytosol	41.04	55.52
KRH34390	Soybean	cytosol	54.2	52.41
KRG92416	Soybean	cytosol	53.74	51.86
VIT_05s0049g01160.t01	Wine grape	nucleus	58.5	51.6
Solyc09g090160.2.1	Tomato	nucleus	57.14	50.3
PGSC0003DMT400044357	Potato	nucleus	55.78	49.1
Os07t0446100-01	Rice	cytosol	48.07	41.33
TraesCS1B01G107100.1	Wheat	cytosol	47.39	40.66
EER98436	Sorghum	cytosol	47.17	40.31
TraesCS1A01G088100.2	Wheat	cytosol	47.17	40.08
Zm00001d019547_P002	Maize	cytosol	46.49	39.65
HORVU1Hr1G019320.3	Barley	cytosol	47.62	39.4
TraesCS1D01G089400.1	Wheat	cytosol	47.62	38.04
HORVU3Hr1G065130.2	Barley	cytosol	41.72	36.01
GSMUA_Achr5P14580_001	Banana	cytosol	39.0	33.27
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	41.72	30.26

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078F791	UniProt:A0A078F791	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY08992	ProteinID:CDY08992	ProteinID:CDY08992.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00001095001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796	PFAM:PF13920	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0004EE80FF	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC01g30990DBnaC01g30990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F791]

Coordinates

chrLK031991:+:402390..404804

Molecular Weight (calculated)

48144.4 Da

IEP (calculated)

7.112

GRAVY (calculated)

-0.347

Length

441 amino acids

Sequence
(BLAST)

001: MGQQQSKGKL LFEQVSYGNS EGIQSLHRER ADLEWMDREG KTPLIMACMN SELYDVAETL IELGANVNAY CPARHAGTPL HHAAKRGFEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIES PICLFSGWMR EFYGPAILDL FAPQLLSRKV WVVIVPTGSR NPAKPFKLEL VIYASLQDAQ PRAVMPLWKA
201: NLEEPKAKQS DTSVIIVENS TIPRRRRQRR KRRHQVVRQI RLRLAPSIEG DEQQLKWFCD ACKGIPQTTY PSNFLQTAPS APPLHHAMSE TPNANHHSID
301: EASSSTTPPP PPPSSGKAST SGLNSHESVI VHEPSPSAPP LTDDDDVQTL ADGPVQYPTI DSTPVDVSSS SPLPPSAEGE KKEDGSAGQC SVCLDALSDA
401: VCVPCGHVAG CTSCLTEIKS KNLGCLVCRA KIDQIVKVYR V

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.