CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97509
CDY23634
CDY37483
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	CDX97509	AT3G13710.1	21798944
AT3G23280.1	CDY23634	AT3G13710.1	21798944
AT3G23280.1	CDY37483	AT3G13710.1	21798944
AT3G23280.1	CDY51735	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014934.1-P	Field mustard	nucleus	89.61	67.41
CDY68171	Canola	cytosol	17.51	66.29
AT3G23280.1	Thale cress	nucleus	81.6	59.52
CDX85082	Canola	nucleus	89.61	58.98
CDY08992	Canola	cytosol	75.96	58.05
CDY49072	Canola	cytosol	64.39	56.81
CDX67415	Canola	cytosol	64.09	56.54
CDX77533	Canola	cytosol	54.9	51.97
CDX85079	Canola	cytosol	54.9	51.97
CDY03596	Canola	cytosol	46.59	48.16
CDY62836	Canola	nucleus	54.6	44.55
CDY08997	Canola	cytosol	49.26	44.15
VIT_05s0049g01160.t01	Wine grape	nucleus	63.5	42.8
KRH34390	Soybean	cytosol	57.86	42.76
KRG92416	Soybean	cytosol	57.57	42.45
Solyc09g090160.2.1	Tomato	nucleus	62.02	41.72
PGSC0003DMT400044357	Potato	nucleus	61.13	41.12
CDY35522	Canola	cytosol	61.72	37.08
TraesCS1B01G107100.1	Wheat	cytosol	51.04	33.46
Os07t0446100-01	Rice	cytosol	50.15	32.94
TraesCS1A01G088100.2	Wheat	cytosol	50.45	32.76
EER98436	Sorghum	cytosol	50.15	32.75
HORVU1Hr1G019320.3	Barley	cytosol	51.63	32.65
Zm00001d019547_P002	Maize	cytosol	49.85	32.5
GSMUA_Achr5P14580_001	Banana	cytosol	49.55	32.3
TraesCS1D01G089400.1	Wheat	cytosol	51.34	31.34
HORVU3Hr1G065130.2	Barley	cytosol	45.1	29.75
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	51.63	28.62

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	UniProt:A0A078JUD1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlants:CDY71158	ProteinID:CDY71158	ProteinID:CDY71158.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00011765001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00248	SUPFAM:SSF48403
UniParc:UPI0004EDC45D	SEG:seg	:	:	:	:

Description

BnaAnng36340DBnaAnng36340D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUD1]

Coordinates

chrLK044715:+:882..2812

Molecular Weight (calculated)

37064.5 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.403

Length

337 amino acids

Sequence
(BLAST)

001: MGQQQSKGEL LFQQVSYGNA EGIRSLRREG ADLEWMDREG KTPLIMACMN SELYDVAKTL IELGANVNAY RPARHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIES HICLFSGWMR EFYGPAILDL FAPQLLSRRV WVVIVPTGSR NPAKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKGKQS DTSVMIVDNS TIPSRRRQRR RACASHGRRR PQVVRQTRLK LAPSIEGDGQ QLKWFCDACK GIPQPAHPPV FLQTAPSAPP LHPAMSDTPD
301: INHHSIGEAS SSSAPLPPTP TPSGKASTSG FNSHESV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.