CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97509
CDY23634
CDY37483
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	CDX97509	AT3G13710.1	21798944
AT3G23280.1	CDY23634	AT3G13710.1	21798944
AT3G23280.1	CDY37483	AT3G13710.1	21798944
AT3G23280.1	CDY51735	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62836	Canola	nucleus	66.76	60.77
CDY08992	Canola	cytosol	63.83	54.42
CDY68171	Canola	cytosol	11.97	50.56
AT3G23280.1	Thale cress	nucleus	61.17	49.78
CDY71158	Canola	nucleus	44.15	49.26
CDX77533	Canola	cytosol	44.95	47.47
CDX85082	Canola	nucleus	64.63	47.46
CDY49072	Canola	cytosol	47.61	46.86
CDX85079	Canola	cytosol	43.88	46.35
CDX67415	Canola	cytosol	46.81	46.07
CDY03596	Canola	cytosol	35.64	41.1
KRH34390	Soybean	cytosol	49.2	40.57
KRG92416	Soybean	cytosol	49.2	40.48
Solyc09g090160.2.1	Tomato	nucleus	50.53	37.92
CDY35522	Canola	cytosol	56.12	37.61
PGSC0003DMT400044357	Potato	nucleus	49.73	37.33
VIT_05s0049g01160.t01	Wine grape	nucleus	48.94	36.8
Os07t0446100-01	Rice	cytosol	44.41	32.55
TraesCS1B01G107100.1	Wheat	cytosol	44.15	32.3
Zm00001d019547_P002	Maize	cytosol	44.15	32.11
TraesCS1A01G088100.2	Wheat	cytosol	43.88	31.79
EER98436	Sorghum	cytosol	43.62	31.78
HORVU1Hr1G019320.3	Barley	cytosol	44.68	31.52
TraesCS1D01G089400.1	Wheat	cytosol	43.88	29.89
HORVU3Hr1G065130.2	Barley	cytosol	39.89	29.35
GSMUA_Achr5P14580_001	Banana	cytosol	35.37	25.73
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	37.23	23.03

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078F794	UniProt:A0A078F794	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY08997	ProteinID:CDY08997	ProteinID:CDY08997.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00001103001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0004EDDEC0
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC01g30940DBnaC01g30940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F794]

Coordinates

chrLK031991:+:431025..437121

Molecular Weight (calculated)

40596.0 Da

IEP (calculated)

5.119

GRAVY (calculated)

-0.379

Length

376 amino acids

Sequence
(BLAST)

001: MGLQQSKGKL VSQQVRDGNS EGILALIREG ADLEWMDRKS RTPLIMACRK YELCDVDKTL IELGANVNAS RSGRHAGTPL HHAAKNANPL VLNDDCQTPL
101: EVARDKGFGY VVGAIERHIC LFSGYMYQFC GPADLDLYSG HSLLRVDKGW VVVVPTGSRN PAEPLKLEVA VYDHRLDDQP RTVMPLWKAN LEEPITNEAD
201: ISVMITVDDS TRIPQPIPPA PPLMSETPNT NHHSIGEARS STAPPPPPSS GKASTSGLNS HESVIVHEPS PSAPPLTDDD DVQTSEEGQI HYPTIDSTPV
301: DVPSSYPLPA SAEGEKKEDG SSGQCSICLD APSDAVCSPC GHVAGCMSCL TEIKSKNYGC PVCRAKIDQI VRLYRV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.