CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67415	Canola	cytosol	95.81	95.81
Bra028419.1-P	Field mustard	nucleus	95.29	95.54
CDY03596	Canola	cytosol	67.28	78.83
CDY68171	Canola	cytosol	17.28	74.16
AT4G14365.1	Thale cress	cytosol	65.71	66.76
CDY71158	Canola	nucleus	56.81	64.39
CDX85079	Canola	cytosol	52.36	56.18
CDX77533	Canola	cytosol	52.36	56.18
CDY08992	Canola	cytosol	60.99	52.83
CDX85082	Canola	nucleus	68.32	50.98
CDY08997	Canola	cytosol	46.86	47.61
CDY62836	Canola	nucleus	50.79	46.97
KRG92416	Soybean	cytosol	52.62	43.98
KRH34390	Soybean	cytosol	52.36	43.86
VIT_05s0049g01160.t01	Wine grape	nucleus	56.81	43.4
Solyc09g090160.2.1	Tomato	nucleus	56.28	42.91
PGSC0003DMT400044357	Potato	nucleus	55.5	42.32
TraesCS1B01G107100.1	Wheat	cytosol	48.43	35.99
Os07t0446100-01	Rice	cytosol	47.64	35.48
TraesCS1A01G088100.2	Wheat	cytosol	48.17	35.45
CDY35522	Canola	cytosol	51.57	35.12
HORVU1Hr1G019320.3	Barley	cytosol	48.95	35.08
Zm00001d019547_P002	Maize	cytosol	46.86	34.62
EER98436	Sorghum	cytosol	46.6	34.5
TraesCS1D01G089400.1	Wheat	cytosol	48.17	33.33
HORVU3Hr1G065130.2	Barley	cytosol	43.46	32.49
GSMUA_Achr5P14580_001	Banana	cytosol	39.27	29.01
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	40.58	25.49

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078IGI3	UniProt:A0A078IGI3	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY49072	ProteinID:CDY49072	ProteinID:CDY49072.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00092293001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796	PFAM:PF13920	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI0004EED514	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaC06g12460DBnaC06g12460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGI3]

Coordinates

chrLK032809:-:16940..19158

Molecular Weight (calculated)

42086.5 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.252

Length

382 amino acids

Sequence
(BLAST)

001: MGQQQFKDEV LSQQVSQNDV EGIRSLRHEG AGLEWSDKEG RTPLILACAK AKLYDVAETL LELGSNVNAY HSGCNAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLALNDDFQ TPLDVARDNG HCDVVRAIES HICLFSGWMR QFYGTSFQEL FSPQLLSRRV WVVIVPTSSG NPAKPLKLEL VVYASLEDAQ PITVMPLWKA
201: KLEEPRSDQS DASVMIVDNS SKRKKQRRRG YISHARRWAQ VDRQMRLKLA AATKGDIKQL NWFCEACKGT PQPMNHPVFL QTTEKVISNE LTPSVPLLRA
301: AVEVEDGSVH YPSFPSTKFE SREGSGGSGV CVICVDASAE AACVPCGHVA GCISCLKEIK NKKLACPICR ASIDQVIKLY HV

Best Arabidopsis Sequence Match ( AT4G14365.1 )
(BLAST)

001: MGQQQSQSKD EMLFQEVSNN NVEGIKSLHH EGAGLEGVDK LGRTPLILAC TNDDLYDVAK TLLELGSNVN AYRSGCNGGT PLHHAAKRGL VHTVKLLLSH
101: GANPLVLDDD VKTALEVARD EGYSNVVRAI ESHICLFSGC MREYSGSSLL NLFAPQLLSR KVWVVVVPTG SRNPTKPLKL ELVLYDSIQD AQPRMVIPLW
201: KANLEEPKSF RCDDSVMIID DSRSPKSMRQ RRESGFISQA RRWAQVDRQI RLKLAAEIKG DMKQMNWFSE ACKGVPQPMN PPRFMKTSQA TTTTTNVPAL
301: SDDALTRVAM SLPSPKTANK EDGLCVICVD APSEAVCVPC GHVAGCISCL KEIENKKMGC PVCRANIDQV IKLYHV

Arabidopsis Description

XBAT34Putative E3 ubiquitin-protein ligase XBAT34 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.