Factsheet for VIT_05s0049g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	VIT_09s0002g02400.t01	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68171	Canola	cytosol	11.6	65.17
KRG92416	Soybean	cytosol	59.4	64.99
KRH34390	Soybean	cytosol	59.0	64.69
Solyc09g090160.2.1	Tomato	nucleus	64.2	64.07
CDY71158	Canola	nucleus	42.8	63.5
PGSC0003DMT400044357	Potato	nucleus	63.6	63.47
Bra014934.1-P	Field mustard	nucleus	56.2	62.72
AT3G23280.1	Thale cress	nucleus	57.0	61.69
Bra028419.1-P	Field mustard	nucleus	44.6	58.53
CDY08992	Canola	cytosol	51.6	58.5
CDX67415	Canola	cytosol	44.2	57.85
AT4G14365.1	Thale cress	cytosol	42.8	56.91
CDY49072	Canola	cytosol	43.4	56.81
VIT_12s0028g03750.t01	Wine grape	cytosol	54.4	54.73
CDX85082	Canola	nucleus	56.0	54.69
CDX85079	Canola	cytosol	38.6	54.21
Bra014932.1-P	Field mustard	cytosol	38.2	53.65
CDX77533	Canola	cytosol	38.2	53.65
CDY03596	Canola	cytosol	34.8	53.37
Bra014247.1-P	Field mustard	nucleus	31.8	52.65
CDY08997	Canola	cytosol	36.8	48.94
EER98436	Sorghum	cytosol	50.0	48.45
Os07t0446100-01	Rice	cytosol	49.2	47.95
TraesCS1B01G107100.1	Wheat	cytosol	49.2	47.86
Zm00001d019547_P002	Maize	cytosol	49.2	47.58
TraesCS1A01G088100.2	Wheat	cytosol	48.8	47.01
CDY62836	Canola	nucleus	38.2	46.25
HORVU1Hr1G019320.3	Barley	cytosol	49.0	45.97
TraesCS1D01G089400.1	Wheat	cytosol	49.4	44.75
GSMUA_Achr5P14580_001	Banana	cytosol	42.2	40.81
CDY35522	Canola	cytosol	45.2	40.29
HORVU3Hr1G065130.2	Barley	cytosol	40.0	39.14
Bra023739.1-P	Field mustard	vacuole	44.4	36.82
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	43.6	35.86

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:104879290	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	UniProt:A5BSQ6	EMBL:AM469695
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN72662	ProteinID:CAN72662.1	ProteinID:CCB48589
ProteinID:CCB48589.1	EMBL:FN595496	GO:GO:0000151	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF13637	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	TIGR:TC52151	UniParc:UPI0001521B4C	ArrayExpress:VIT_05s0049g01160	EnsemblPlantsGene:VIT_05s0049g01160	EnsemblPlants:VIT_05s0049g01160.t01
RefSeq:XP_010650095.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:8218849..8230770

Molecular Weight (calculated)

53951.3 Da

IEP (calculated)

6.727

GRAVY (calculated)

-0.229

Length

500 amino acids

Sequence
(BLAST)

001: MGQQQSKDEL LHQQVVYGNV EGIKALSREG AGLEWTDREG KTPLIVACMF SELFNVAKTL IELGANVNAY RPGRHAGTPL HHAAKKGLEE TVNLLLSHGA
101: NALVMNDDCQ TALDVARAKG HSRVVRVIES HICLFSGWLR EFYGPGFLEV LAPQWVSRKV WVVILPCGSR KPTKPFKLEL AIYSSLQDAQ PRTTIALWKA
201: NMDEAKFEDP DPAVIILDNS TISRGRRRRR CYTSREARCK PRALRQTQIK LAPEKKSDSQ QLQWFCNACK GIPQAMHPPA FLHNAQTPAV PPTAPPTAED
301: LELAMAINAS IQSAMQEGPP LLDSPSSFEN GASTSWNNSV NITNHNCPDA LVAPVAPASS KASSSECVVH EAGPSTNSTQ HIQIETHIPD IPVQASTASA
401: PPIADEVVDD GPVQYPSIDS SPVDLTSPAF ETSAAASEQS KEGGAASSCV ICLDAPIEGA CIPCGHMAGC MSCLNEIKAK KWGCPVCRAK IDQVVKLYSV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.