Factsheet for Bra014932.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021504.1-P
Bra027406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	Bra021504.1-P	AT3G13710.1	21798944
AT3G23280.1	Bra027406.1-P	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77533	Canola	cytosol	99.16	99.16
Bra014934.1-P	Field mustard	nucleus	66.01	52.46
Bra028419.1-P	Field mustard	nucleus	55.62	51.97
AT3G23280.1	Thale cress	nucleus	61.8	47.62
Bra014247.1-P	Field mustard	nucleus	38.2	45.03
KRH34390	Soybean	cytosol	51.12	39.91
KRG92416	Soybean	cytosol	50.84	39.61
VIT_05s0049g01160.t01	Wine grape	nucleus	53.65	38.2
Solyc09g090160.2.1	Tomato	nucleus	52.25	37.13
PGSC0003DMT400044357	Potato	nucleus	51.12	36.33
Os07t0446100-01	Rice	cytosol	48.03	33.33
TraesCS1B01G107100.1	Wheat	cytosol	47.19	32.68
TraesCS1A01G088100.2	Wheat	cytosol	47.19	32.37
HORVU1Hr1G019320.3	Barley	cytosol	47.47	31.71
EER98436	Sorghum	cytosol	45.79	31.59
Zm00001d019547_P002	Maize	cytosol	45.79	31.53
Bra023739.1-P	Field mustard	vacuole	51.97	30.68
TraesCS1D01G089400.1	Wheat	cytosol	46.91	30.25
HORVU3Hr1G065130.2	Barley	cytosol	41.85	29.16
GSMUA_Achr5P14580_001	Banana	cytosol	39.33	27.08
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	39.04	22.86

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra014932	EnsemblPlants:Bra014932.1	EnsemblPlants:Bra014932.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4DEL0
PFAM:PF00023	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002540E78	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

AT3G23280 (E=1e-084) | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein

Coordinates

chrA07:-:5121954..5124253

Molecular Weight (calculated)

39195.5 Da

IEP (calculated)

8.521

GRAVY (calculated)

-0.271

Length

356 amino acids

Sequence
(BLAST)

001: MGQMQSKEKL MFNHVRSGNV EGIRALCLEG ANLEWMDKEG NTPLILACKK SKLYDVAQTL IELGANVNAH PPAPRDATPL YHAARRGLEK TVKLLLSNGE
101: NYDCQTPLQQ ARYYKYTKVV RAIENHICVF SGWMREFYGP ALLGVFAPQL LSRRVWVVII PTSSIYPKPY KFELVVYASL KDAQPRVVMA LRNPHLKEPE
201: EMHPNTSVTI VDNDNKKKSL KLASSIEEGR QQLKWFCDAC KGIPQPVRRP PVVVQTVLPS APPLADYDTE AIEEGPMNYP LSGSTTPSAS GGGGNKKDGG
301: SSGQCLICMD APSDGICVPC GHVAGCMSCL TQIKSHASEC PICRANIHQV TKVYRV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.