Factsheet for Bra023739.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 1
vacuole 8
extracellular 5
endoplasmic reticulum 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021504.1-P
Bra027406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	Bra021504.1-P	AT3G13710.1	21798944
AT3G23280.1	Bra027406.1-P	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08992	Canola	cytosol	59.87	81.86
Bra014934.1-P	Field mustard	nucleus	53.23	71.65
AT3G23280.1	Thale cress	nucleus	46.27	60.39
Bra028419.1-P	Field mustard	nucleus	32.84	51.97
Bra014932.1-P	Field mustard	cytosol	30.68	51.97
Solyc09g090160.2.1	Tomato	nucleus	37.15	44.71
KRG92416	Soybean	cytosol	33.83	44.64
KRH34390	Soybean	cytosol	33.66	44.52
VIT_05s0049g01160.t01	Wine grape	nucleus	36.82	44.4
PGSC0003DMT400044357	Potato	nucleus	36.15	43.51
Bra014247.1-P	Field mustard	nucleus	21.23	42.38
Os07t0446100-01	Rice	cytosol	30.02	35.28
TraesCS1B01G107100.1	Wheat	cytosol	29.52	34.63
EER98436	Sorghum	cytosol	29.52	34.5
TraesCS1A01G088100.2	Wheat	cytosol	29.35	34.1
Zm00001d019547_P002	Maize	cytosol	29.02	33.85
GSMUA_Achr5P14580_001	Banana	cytosol	28.86	33.66
HORVU1Hr1G019320.3	Barley	cytosol	29.35	33.21
TraesCS1D01G089400.1	Wheat	cytosol	29.68	32.43
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	32.67	32.4
HORVU3Hr1G065130.2	Barley	cytosol	25.54	30.14

Protein Annotations

KEGG:00053+1.13.99.1	KEGG:00562+1.13.99.1	Gene3D:1.20.120.610	Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	MapMan:24.1.1.1.2
InterPro:ATPase_proteolipid_csu	InterPro:ATPase_proteolipid_su_C_euk	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:Bra023739
EnsemblPlants:Bra023739.1	EnsemblPlants:Bra023739.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0015078	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021	GO:GO:0019310	GO:GO:0033179
GO:GO:0050113	GO:GO:0055114	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	InterPro:Inositol_oxygenase
UniProt:M4E4N6	PFAM:PF05153	PFAM:PF13857	PRINTS:PR00122	PFscan:PS50088	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00248	SUPFAM:SSF109604	SUPFAM:SSF48403	TIGRFAMs:TIGR01100
TMHMM:TMhelix	UniParc:UPI0002543D91	SEG:seg	:	:	:

Description

AT3G23280 (E=6e-141) | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein

Coordinates

chrA01:-:19490092..19493762

Molecular Weight (calculated)

67498.7 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.318

Length

603 amino acids

Sequence
(BLAST)

001: MRSIVPVVMA GVLGIYGLII AVIISTRINP KAKSYYLFDG YTHLSSGLAC GLAGLSTDMA IGIVSDAGVS YTTDKSDIRH DEMGLITQAE HDRLEKIVPL
101: YELSIKLCAL HKSEAYKHLM NNEDRENMKW LKVFNKYDLY GKSKVRINVE EVKSYYISLI IKDRFNYQRR YFFFWTLYNQ LFLLSFSEGK MGQQQSKGEL
201: LFEQVSYGNS EGIQSLHREG ADLEWMDREG KTPLIMACMN SELYDVAETL IELGANVNAY CPARHAGTPL HHAAKRGFEN IVKLLLSHGA NPLVLNDDCQ
301: TPLEVARVKG FSNVVRAIES HICLFSGWMR EFYGPAILDL FDPQLLSRKV WVVIVPTGSR NPSKPFKLEL VIYASLQEAQ PRAVMPLWKA NLEEPKPKQS
401: DTSVIIVENS TIPRRRRQRR KRRHQVVRPR LRLAPSIEGD DQQLKWFCDA CKGIPQTTHP PNFLQTVPSA PPLHHAMSET PNANHHSIDE ASSSTTPPPP
501: PPSSGKASTS GLNSHESVIV HEPSPSAPPL TDDDDVQTPE EGPFHYPTID STPVDVPSSY PLPASAEGEK KEDGALDSVL YVSTLHLTRF AFRVDMSQDA
601: CLA

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.