Factsheet for PGSC0003DMT400044357

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	PGSC0003DMT400006409	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090160.2.1	Tomato	nucleus	96.81	96.81
CDY68171	Canola	cytosol	11.98	67.42
VIT_05s0049g01160.t01	Wine grape	nucleus	63.47	63.6
CDY71158	Canola	nucleus	41.12	61.13
KRH34390	Soybean	cytosol	54.69	60.09
KRG92416	Soybean	cytosol	54.49	59.74
Bra014934.1-P	Field mustard	nucleus	53.29	59.6
AT3G23280.1	Thale cress	nucleus	54.29	58.87
CDX67415	Canola	cytosol	43.31	56.81
Bra028419.1-P	Field mustard	nucleus	42.91	56.43
AT4G14365.1	Thale cress	cytosol	42.12	56.12
CDY08992	Canola	cytosol	49.1	55.78
CDY49072	Canola	cytosol	42.32	55.5
CDX85082	Canola	nucleus	53.09	51.95
CDY03596	Canola	cytosol	33.73	51.84
CDX77533	Canola	cytosol	36.53	51.4
CDX85079	Canola	cytosol	36.33	51.12
Bra014932.1-P	Field mustard	cytosol	36.33	51.12
CDY08997	Canola	cytosol	37.33	49.73
Bra014247.1-P	Field mustard	nucleus	29.94	49.67
Os07t0446100-01	Rice	cytosol	50.5	49.32
TraesCS1B01G107100.1	Wheat	cytosol	50.5	49.22
TraesCS1A01G088100.2	Wheat	cytosol	49.9	48.17
Zm00001d019547_P002	Maize	cytosol	49.7	48.16
HORVU1Hr1G019320.3	Barley	cytosol	50.7	47.65
EER98436	Sorghum	cytosol	48.9	47.48
TraesCS1D01G089400.1	Wheat	cytosol	50.7	46.01
CDY62836	Canola	nucleus	36.13	43.83
PGSC0003DMT400028272	Potato	nucleus	47.11	41.92
GSMUA_Achr5P14580_001	Banana	cytosol	42.71	41.39
HORVU3Hr1G065130.2	Barley	cytosol	41.12	40.31
CDY35522	Canola	cytosol	42.91	38.32
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	45.11	37.17
Bra023739.1-P	Field mustard	vacuole	43.51	36.15

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102580530	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1BG24	PFAM:PF00023	PFAM:PF13637
PFAM:PF13920	EnsemblPlantsGene:PGSC0003DMG400017222	PGSC:PGSC0003DMG400017222	EnsemblPlants:PGSC0003DMT400044357	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI000295783B	RefSeq:XP_015167375.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017222]

Coordinates

chr9:+:56466308..56475098

Molecular Weight (calculated)

54205.8 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.224

Length

501 amino acids

Sequence
(BLAST)

001: MGQQQSKGEL LYQQVNYGNV EGIKSLHREG AGLEWIDKEG KTPLIVACMN PGLYNVAKAL IELGANVDAY RPGRHAGTPL HHAAKRGLEQ TVKLLLSHRA
101: NALIMNDDCQ TPLDVARIKG FSNVVRAIES HICLFSGWLR ELYGPGFLEL LAPQLLSRKV WVVVLPCGSR NLRKSFRLEL AIYSAVQDAQ PRTIVALWKA
201: NMEEPNFSQP DSAVIISDIS NIPKRWRRKR GIMPSQLIKS RLRGARRARI KLTAVQESEK QQLQSFCNAC KGIPQVMHPA FPFSSQTPVV PATAPSTTED
301: VELAMAINAS LQSASQQRPT YHENHPGSGT ETSMGWINPV EVASHDGSSF TGASQKASSN GCQVEEASSS GTQVEQVQVP SETSTVVQSM PENLVTASVP
401: TAPPLTNDVI DNGPIHYPSI DSSPIDLSSV TVQNSGAHES KNPDGASSSC VICLDAPVEG ACIPCGHMAG CMSCLNEIKG KKWGCPVCRA TIDQVIRLYA
501: V

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.