Factsheet for Solyc09g090160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g121460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	Solyc03g121460.1.1	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044357	Potato	nucleus	96.81	96.81
CDY68171	Canola	cytosol	12.18	68.54
VIT_05s0049g01160.t01	Wine grape	nucleus	64.07	64.2
CDY71158	Canola	nucleus	41.72	62.02
KRH34390	Soybean	cytosol	55.29	60.75
Bra014934.1-P	Field mustard	nucleus	54.29	60.71
KRG92416	Soybean	cytosol	55.09	60.39
AT3G23280.1	Thale cress	nucleus	54.29	58.87
CDX67415	Canola	cytosol	43.91	57.59
Bra028419.1-P	Field mustard	nucleus	43.51	57.22
CDY08992	Canola	cytosol	50.3	57.14
AT4G14365.1	Thale cress	cytosol	42.71	56.91
CDY49072	Canola	cytosol	42.91	56.28
CDX85082	Canola	nucleus	54.09	52.93
CDY03596	Canola	cytosol	34.33	52.76
CDX77533	Canola	cytosol	37.33	52.53
Bra014932.1-P	Field mustard	cytosol	37.13	52.25
CDX85079	Canola	cytosol	36.73	51.69
CDY08997	Canola	cytosol	37.92	50.53
Bra014247.1-P	Field mustard	nucleus	30.34	50.33
TraesCS1B01G107100.1	Wheat	cytosol	49.5	48.25
Os07t0446100-01	Rice	cytosol	49.3	48.15
TraesCS1A01G088100.2	Wheat	cytosol	48.9	47.21
Zm00001d019547_P002	Maize	cytosol	48.5	47.0
HORVU1Hr1G019320.3	Barley	cytosol	49.7	46.72
EER98436	Sorghum	cytosol	47.7	46.32
TraesCS1D01G089400.1	Wheat	cytosol	49.7	45.11
CDY62836	Canola	nucleus	36.73	44.55
GSMUA_Achr5P14580_001	Banana	cytosol	42.12	40.81
HORVU3Hr1G065130.2	Barley	cytosol	40.72	39.92
CDY35522	Canola	cytosol	44.11	39.39
Solyc06g008500.2.1	Tomato	cytosol	43.71	39.18
Bra023739.1-P	Field mustard	vacuole	44.71	37.15
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	44.71	36.84

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0000151	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031625	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
UniProt:K4CW42	PFAM:PF00023	PFAM:PF13637	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g090160.2	EnsemblPlants:Solyc09g090160.2.1	UniParc:UPI000276CB64	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:69698771..69705068

Molecular Weight (calculated)

54350.1 Da

IEP (calculated)

7.627

GRAVY (calculated)

-0.239

Length

501 amino acids

Sequence
(BLAST)

001: MGQQQSKGEL LYQQVNYGNV EGIKSLHREG AGLEWIDKEG KTPLIVACMN PGLYNVAKTL IELGANVDAY RPGRHAGTPL HHAAKRGLEQ TVKLLLSHRA
101: NALLMNDDCQ TPLDVARIKG FSNVVRAIES HICLFSGWLR ELYGPGFLEL LAPQLLSRKV WVVVLPCGSR NLRKPFRLEL AIYSAVQDAQ PRTIVALWKA
201: NMEEPNFSQP DSAVIISDIS NIPKRWRRRR GIMPSQLIKS RLRGARRARI KLTAVQESEK QQLQSFCNAC KGIPQVMHPA FPFSSQPPMV PATAPSTTED
301: VELAMAITAS LQSASQQRPT YHENHTGSGA ETSMGWINPV EVASHDDSSF KGASQKASSS GCQVEEASSS GTQVEQVQVP SEMSTVVQSM PENPVTASVP
401: TAPPLTDDII DNGPIHYPSI DSSPIDLSSV TVQNSGAHES KNPDGASSSC VICLDAPVEG ACIPCGHMAG CMSCLNEIKG KKWGCPVCRA TIDQVIRLYA
501: V

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.