Factsheet for TraesCS1A01G088100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G23280.1	TraesCS3D01G106500.1	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G107100.1	Wheat	cytosol	96.72	97.67
TraesCS1D01G089400.1	Wheat	cytosol	96.15	90.4
HORVU1Hr1G019320.3	Barley	cytosol	91.91	89.49
Os07t0446100-01	Rice	cytosol	75.34	76.22
EER98436	Sorghum	cytosol	71.48	71.9
Zm00001d019547_P002	Maize	cytosol	71.1	71.37
HORVU3Hr1G065130.2	Barley	cytosol	53.56	54.4
CDY68171	Canola	cytosol	9.25	53.93
KRG92416	Soybean	cytosol	45.47	51.64
KRH34390	Soybean	cytosol	45.28	51.54
Bra014934.1-P	Field mustard	nucleus	43.55	50.45
CDY71158	Canola	nucleus	32.76	50.45
PGSC0003DMT400044357	Potato	nucleus	48.17	49.9
AT3G23280.1	Thale cress	nucleus	44.12	49.57
Solyc09g090160.2.1	Tomato	nucleus	47.21	48.9
VIT_05s0049g01160.t01	Wine grape	nucleus	47.01	48.8
Bra028419.1-P	Field mustard	nucleus	35.65	48.56
GSMUA_Achr5P14580_001	Banana	cytosol	48.36	48.55
CDY49072	Canola	cytosol	35.45	48.17
CDX67415	Canola	cytosol	35.26	47.91
AT4G14365.1	Thale cress	cytosol	34.49	47.61
VIT_12s0028g03750.t01	Wine grape	cytosol	45.47	47.48
CDX77533	Canola	cytosol	32.37	47.19
Bra014932.1-P	Field mustard	cytosol	32.37	47.19
CDY08992	Canola	cytosol	40.08	47.17
CDX85079	Canola	cytosol	32.18	46.91
CDX85082	Canola	nucleus	43.74	44.34
CDY08997	Canola	cytosol	31.79	43.88
CDY03596	Canola	cytosol	27.55	43.87
Bra014247.1-P	Field mustard	nucleus	25.24	43.38
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	49.13	41.94
CDY62836	Canola	nucleus	32.56	40.92
PGSC0003DMT400028272	Potato	nucleus	42.39	39.08
Solyc06g008500.2.1	Tomato	cytosol	41.04	38.1
CDY35522	Canola	cytosol	35.26	32.62
Bra023739.1-P	Field mustard	vacuole	34.1	29.35

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF13637	PFAM:PF13920	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1A01G088100	EnsemblPlants:TraesCS1A01G088100.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd00204	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:76486217..76492077

Molecular Weight (calculated)

55323.1 Da

IEP (calculated)

7.335

GRAVY (calculated)

-0.281

Length

519 amino acids

Sequence
(BLAST)

001: MGMQQSKEEL LYQQVNYGNI EGIRNLRAQG AGVEWIDKEG KTPLMVASMR PDLLNVAKAL LELGANVNAY RPGSHAGTAL HHAAKKGLDP TVHLLLSHGG
101: LRCCSNPFIT NDDCNTALDL AREKGHVNVV RAIEGRISLF SGWMRENYGP GFLEAFAPQF MTRKIWAVIL PREARSPTRP VKLELAIYPE LQAAKPRVVV
201: KLWKSQLEEP KYNLADPSMT IFDKVTKSRY KLLPAYEGDK QQLRSFYSAC CGMAQVASMV PARPVNAPSP NPIPNPSLAP SAESTPSKED VELAMAINAS
301: IQSAIAEGVP NVQPMTSTNS SLNGWGSPDS PAPSKTSGQA QGDAPSSSKY NGWDVPGTSS NQSSSKPNKS QNNNPSIAIT PEALPVPTPT ALPVPTPTVL
401: PTLPTPTAPP LAEGTFYDGP IEYPSIDFTP VDVTMPPTEG GGTALNSAKP VENEAGASSS GNTPSGTCVI CLDAPVEGAC IPCGHMAGCM SCLKDIESKK
501: WGCPICRAKI NQIIRLYAV

Best Arabidopsis Sequence Match ( AT3G23280.2 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TKTRLKFAPS TEGDSQQLKW FCDACKGIPQ PMHPPVFLQA PPSAPPPPSE DGLAMGMNAS LHTTMSDPSN LNHHSIGQAS
301: SSSGPSSSTA PPSGKASAFG FNSHGIGIVL ESSPSAPPLT DDDIATVDDG PIHYPSIDST PVDLPSAASL PASTEGERKE DGNTGTCAIC LDAPSEAVCV
401: PCGHVAGCMS CLKEIKSKNW GCPVCRAKID QVIKLYRV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.