CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97509
CDY23634
CDY37483
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	CDX97509	AT3G13710.1	21798944
AT3G23280.1	CDY23634	AT3G13710.1	21798944
AT3G23280.1	CDY37483	AT3G13710.1	21798944
AT3G23280.1	CDY51735	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08997	Canola	cytosol	60.77	66.76
CDY08992	Canola	cytosol	61.99	58.05
CDY71158	Canola	nucleus	44.55	54.6
AT3G23280.1	Thale cress	nucleus	59.56	53.25
CDY49072	Canola	cytosol	46.97	50.79
CDX67415	Canola	cytosol	46.49	50.26
CDX85082	Canola	nucleus	61.99	50.0
CDX77533	Canola	cytosol	43.1	50.0
CDX85079	Canola	cytosol	42.37	49.16
CDY03596	Canola	cytosol	34.87	44.17
KRG92416	Soybean	cytosol	45.52	41.14
CDY35522	Canola	cytosol	55.21	40.64
KRH34390	Soybean	cytosol	44.55	40.35
VIT_05s0049g01160.t01	Wine grape	nucleus	46.25	38.2
Solyc09g090160.2.1	Tomato	nucleus	44.55	36.73
PGSC0003DMT400044357	Potato	nucleus	43.83	36.13
CDY68171	Canola	cytosol	7.51	34.83
Os07t0446100-01	Rice	cytosol	41.4	33.33
TraesCS1B01G107100.1	Wheat	cytosol	40.92	32.88
TraesCS1A01G088100.2	Wheat	cytosol	40.92	32.56
HORVU1Hr1G019320.3	Barley	cytosol	41.4	32.08
Zm00001d019547_P002	Maize	cytosol	39.95	31.91
EER98436	Sorghum	cytosol	39.47	31.59
TraesCS1D01G089400.1	Wheat	cytosol	41.4	30.98
HORVU3Hr1G065130.2	Barley	cytosol	35.59	28.77
GSMUA_Achr5P14580_001	Banana	cytosol	32.69	26.11
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	34.38	23.36

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078JAL4	UniProt:A0A078JAL4	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY62836	ProteinID:CDY62836	ProteinID:CDY62836.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00037657001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0004EE8AF7
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC05g50910DBnaC05g50910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAL4]

Coordinates

chrLK034203:-:7975..14226

Molecular Weight (calculated)

45718.2 Da

IEP (calculated)

7.088

GRAVY (calculated)

-0.474

Length

413 amino acids

Sequence
(BLAST)

001: MGKKKSKGEL LYEQASYNEF QKQVSYDNYE SIRALHRQGA DLEWMDRKGR TPWHAGANVN AYCPARHAGA PLHHAAKRDL FPTVELLLSH GANPLVLNDD
101: GQTPLESHIC LFSGWMREFY GPAYLDSQNQ LPSKRVWVVV VPTRSRNPAQ PLKLEVVVYD CSLPTAKPRT VMPLWKANLE EPITDQSDIS VMIIVNESTF
201: LSRWRQRLKR RNEVYTQTHL RLAPSTKGDE QQLKWFCDAC KGIPQPRRVF LQTAPSAHHA MSETPNAIHH SVGEESSSTA PPPPPPSSGK ASTSVLNSQE
301: SVILHEHSPS APPLTDDHIE TLEDGPVHYP TIDSTPVDVL SSSPLPASAE GEKKEDGSSG QCSICLDAPS DVVCVPCGHL AGCMSCLIEI KSNNGRCPVC
401: RAKIDQIIKL YRV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.