CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97509
CDY23634
CDY37483
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23280.1	CDX97509	AT3G13710.1	21798944
AT3G23280.1	CDY23634	AT3G13710.1	21798944
AT3G23280.1	CDY37483	AT3G13710.1	21798944
AT3G23280.1	CDY51735	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014934.1-P	Field mustard	nucleus	87.3	99.78
CDY71158	Canola	nucleus	58.98	89.61
CDY08992	Canola	cytosol	70.9	82.31
AT3G23280.1	Thale cress	nucleus	71.68	79.44
CDX67415	Canola	cytosol	50.98	68.32
CDY49072	Canola	cytosol	50.98	68.32
CDX77533	Canola	cytosol	46.09	66.29
CDY68171	Canola	cytosol	11.52	66.29
CDX85079	Canola	cytosol	45.9	66.01
CDY08997	Canola	cytosol	47.46	64.63
CDY62836	Canola	nucleus	50.0	61.99
CDY03596	Canola	cytosol	38.48	60.43
CDY35522	Canola	cytosol	63.28	57.75
VIT_05s0049g01160.t01	Wine grape	nucleus	54.69	56.0
KRH34390	Soybean	cytosol	49.41	55.48
KRG92416	Soybean	cytosol	49.02	54.92
Solyc09g090160.2.1	Tomato	nucleus	52.93	54.09
PGSC0003DMT400044357	Potato	nucleus	51.95	53.09
Os07t0446100-01	Rice	cytosol	44.73	44.64
TraesCS1B01G107100.1	Wheat	cytosol	44.73	44.55
TraesCS1A01G088100.2	Wheat	cytosol	44.34	43.74
EER98436	Sorghum	cytosol	43.95	43.6
HORVU1Hr1G019320.3	Barley	cytosol	44.73	42.96
Zm00001d019547_P002	Maize	cytosol	43.36	42.94
TraesCS1D01G089400.1	Wheat	cytosol	44.34	41.12
HORVU3Hr1G065130.2	Barley	cytosol	38.87	38.94
GSMUA_Achr5P14580_001	Banana	cytosol	34.77	34.43
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	36.91	31.09

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078D7I6	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX85082	ProteinID:CDX85082	ProteinID:CDX85082.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00142551001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683
InterPro:IPR036770	PFAM:PF00023	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI0004EF2A0F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC07g08240D

Coordinates

chrLK031840:+:225612..229074

Molecular Weight (calculated)

55915.0 Da

IEP (calculated)

7.660

GRAVY (calculated)

-0.369

Length

512 amino acids

Sequence
(BLAST)

001: MGQHQSKGEL LFQQVSYGNV VGIQSLRHDG VELEWIDREG KTPLMACMNS ELYDVAKTLI ERKMGQQQSK GELLFQQVSY GNAEGIRSLR REGADLEWMD
101: REGKTPLIMA CMNSELYDVA KTLIELGANV NAYRPARHAG TPLHHAAKRG LENTVKLLLS HGANPLVLND DCQTPLEVAR VKGFSNVVRA IESHICLFSG
201: WMREFYGPAI LDLFAPQLLS RRVWVVIVPT GSRNPAKPFK LELVVYASLQ DAQPRTVMPL WKANLEEPKG KQSDTSSVMI VDNSTIPSRR RQRRRACASH
301: GRRRPQVVRQ TRLKLAPSIE GDGQQLKWFC DACKGIPQPA HPPVFLQTAP SAPPLHPAMS DTPDINHHSI GEASSSSAPL PPTPPPSGKA STSGFNSHGS
401: VTVHEPSPSA PPLADEDMET VEEGPIHYPT IDSTPVDVPS PSSLPASTDG EKKDDGSSGQ CSICLDAPSE AVCVPCGHVA GCMSCLTEIK AKKWGCPVCR
501: AKIDQIIKLY RV

Best Arabidopsis Sequence Match ( AT3G23280.1 )
(BLAST)

001: MGQQQSKGEL LYQQVSYGNS EGIRALHRDG GDLEWMDREG KTPLILACMN SELFDVAKTL IELGSNVNAY RPGRHAGTPL HHAAKRGLEN TVKLLLSHGA
101: NPLVLNDDCQ TPLEVARVKG FSNVVRAIEK HICLFSGWMR EFYGPTFLDL FAPQLLSRRV WVVIVPTGSR NPTKPFKLEL VVYASLQDAQ PRTVMPLWKA
201: NLEEPKAKQS DTSVMIVDNS TIPSRRMKKR RVCASHGRRR PQVVRQTRLK FAPSTEGDSQ QLKWFCDACK GIPQPMHPPV FLQAPPSAPP PPSEDGLAMG
301: MNASLHTTMS DPSNLNHHSI GQASSSSGPS SSTAPPSGKA SAFGFNSHGI GIVLESSPSA PPLTDDDIAT VDDGPIHYPS IDSTPVDLPS AASLPASTEG
401: ERKEDGNTGT CAICLDAPSE AVCVPCGHVA GCMSCLKEIK SKNWGCPVCR AKIDQVIKLY RV

Arabidopsis Description

XBAT35Putative E3 ubiquitin-protein ligase XBAT35 [Source:UniProtKB/Swiss-Prot;Acc:Q4FE47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.