Factsheet for Bra028419.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49072	Canola	cytosol	95.54	95.29
Bra014247.1-P	Field mustard	nucleus	62.2	78.48
AT4G14365.1	Thale cress	cytosol	66.67	67.55
Bra014934.1-P	Field mustard	nucleus	68.5	58.26
Bra014932.1-P	Field mustard	cytosol	51.97	55.62
KRG92416	Soybean	cytosol	54.07	45.08
VIT_05s0049g01160.t01	Wine grape	nucleus	58.53	44.6
KRH34390	Soybean	cytosol	53.28	44.52
Solyc09g090160.2.1	Tomato	nucleus	57.22	43.51
PGSC0003DMT400044357	Potato	nucleus	56.43	42.91
TraesCS1B01G107100.1	Wheat	cytosol	48.82	36.19
Os07t0446100-01	Rice	cytosol	48.56	36.06
TraesCS1A01G088100.2	Wheat	cytosol	48.56	35.65
HORVU1Hr1G019320.3	Barley	cytosol	49.08	35.08
Zm00001d019547_P002	Maize	cytosol	47.51	35.01
EER98436	Sorghum	cytosol	47.24	34.88
TraesCS1D01G089400.1	Wheat	cytosol	48.82	33.7
HORVU3Hr1G065130.2	Barley	cytosol	44.36	33.07
Bra023739.1-P	Field mustard	vacuole	51.97	32.84
GSMUA_Achr5P14580_001	Banana	cytosol	39.9	29.4
GSMUA_Achr4P18160_001	Banana	golgi, mitochondrion, nucleus, plastid	41.73	26.15

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra028419	EnsemblPlants:Bra028419.1	EnsemblPlants:Bra028419.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4EI04
PFAM:PF00023	PFAM:PF12796	PFAM:PF13920	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR44837	PANTHER:PTHR44837:SF1	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002543242
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT4G14365 (E=5e-142) | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein

Coordinates

chrA02:+:206230..208214

Molecular Weight (calculated)

42173.7 Da

IEP (calculated)

7.984

GRAVY (calculated)

-0.264

Length

381 amino acids

Sequence
(BLAST)

001: MGQQQFKDEV LFQQVSQNDV EGIKSLRHEG AGLEWSDKEG RTPLILACAK AKLYDVAETL LELGSNVNAY RPGCNAGTPL HHAAKRDLEN TVKLLLSHGA
101: NPLALNDDFQ TPLDVARDNG HSDVVRAIES HICLFSGWMR QFYGTSFQEL FSQLLSRRVW VVIVPTSSGN PTKPLKLELV VYASLQDAQP ITVMPLWKAK
201: LEEPRSDQSD ASVMIVDNSS KRKKQRRRGY ISHARRWAQV DRQMRLKLAA ATKGDIKQLN WFCEACKGTP QPMNLPMFLQ TTEKIISNEL TPSVPLLRVA
301: VEEEDGSVHY PSFPSTNFES KEGSGGSGVC VICVDASAEV ACVPCGHVAG CISCLKEIKN KKLGCPICRA SIDQVIKLYH V

Best Arabidopsis Sequence Match ( AT4G14365.1 )
(BLAST)

001: MGQQQSQSKD EMLFQEVSNN NVEGIKSLHH EGAGLEGVDK LGRTPLILAC TNDDLYDVAK TLLELGSNVN AYRSGCNGGT PLHHAAKRGL VHTVKLLLSH
101: GANPLVLDDD VKTALEVARD EGYSNVVRAI ESHICLFSGC MREYSGSSLL NLFAPQLLSR KVWVVVVPTG SRNPTKPLKL ELVLYDSIQD AQPRMVIPLW
201: KANLEEPKSF RCDDSVMIID DSRSPKSMRQ RRESGFISQA RRWAQVDRQI RLKLAAEIKG DMKQMNWFSE ACKGVPQPMN PPRFMKTSQA TTTTTNVPAL
301: SDDALTRVAM SLPSPKTANK EDGLCVICVD APSEAVCVPC GHVAGCISCL KEIENKKMGC PVCRANIDQV IKLYHV

Arabidopsis Description

XBAT34Putative E3 ubiquitin-protein ligase XBAT34 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.