Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G238800.2 | Wheat | mitochondrion | 98.69 | 98.69 |
| TraesCS4D01G248500.1 | Wheat | mitochondrion | 98.4 | 98.4 |
| HORVU4Hr1G066300.1 | Barley | mitochondrion | 98.26 | 98.26 |
| Os03t0225600-01 | Rice | cytosol | 15.09 | 91.23 |
| OQU92971 | Sorghum | mitochondrion | 89.84 | 90.23 |
| Zm00001d028279_P001 | Maize | mitochondrion | 88.68 | 86.42 |
| KRH76471 | Soybean | cytosol, mitochondrion, nucleus | 45.14 | 72.83 |
| GSMUA_Achr8P14460_001 | Banana | mitochondrion | 73.88 | 72.51 |
| KRH28986 | Soybean | cytosol, mitochondrion, nucleus | 71.84 | 71.43 |
| AT1G31780.1 | Thale cress | cytosol | 69.23 | 70.15 |
| VIT_02s0012g00920.t01 | Wine grape | mitochondrion | 70.25 | 70.14 |
| CDY49154 | Canola | plastid | 68.07 | 68.87 |
| Bra023203.1-P | Field mustard | plastid | 68.07 | 68.87 |
| CDY12296 | Canola | plastid | 67.63 | 68.43 |
| Solyc08g075440.2.1 | Tomato | plastid | 68.21 | 68.02 |
| PGSC0003DMT400004938 | Potato | cytosol | 49.35 | 66.8 |
| KRG90345 | Soybean | cytosol | 5.66 | 59.09 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G062100.1 | EnsemblPlantsGene:TraesCS4A01G062100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006891 | GO:GO:0008150 | GO:GO:0017119 | InterPro:COG6 |
| PANTHER:PTHR21506 | PFAM:PF06419 | SEG:seg | SMART:SM01087 | MapMan:22.6.2.6 | : |
Description
No Description!
Coordinates
chr4A:-:58878577..58884041
Molecular Weight (calculated)
76855.0 Da
IEP (calculated)
6.188
GRAVY (calculated)
-0.268
Length
689 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAALAPGVS RKLKKVLETR TDSPDLLASL GALSTFYEHN TPQARRNLKS SVEQRALAIN RHFLDASLPA QKALDRVEGE VHALDDSWKK IEEALSSCSA
101: STGDIISTTE RLQQELEVIT QRQEIVSCFL RDYQLSNEEI HALREEDIDE KFFKALLHVQ EIHSNCKVLL RTHHQRAGLE LMDMMSVYQE GAYERLCRWV
201: QVECKKLGDT DNPEVSELLK KAVRCLKERP VLFKYCAEEV ANMRHHALFR RFISALTRGG PGGLPRPIEV HAHDPLRYVG DMLGWLHQAL ASERELIAAL
301: LDPDAISDSG PANRRHSVRE GDSSKGESDF TFVLDRIFEG ACRPFKVRVE QVLQSQPSLI VSYKLSNTLE FYGYTISELL GVDTSLCNTI WSLRDATQRT
401: FFNILKSRGE KLLRYPPLVA VDLSPPPAVR EGVSLLLELI STYNSMMVSA SGKGLNFDPV ISAILDPIIQ MCEQAAEAQK SKGALARRGR TSSEPMGSKR
501: DSISVDAILS KKSSTSVLSG ESSSKVYLIN CLSAIEEPLM DQEVATSYVN NLHSMIETHT RALVDKEADS ILSKCGLSSK MPYLKNYSST DGNDDARPLA
601: DVVETSPQML LECLKAFYGI VTGTEGSLPE FEQLQVPRLR SDACYGLARA LAEAYELIYR AVMDPKNCYP DPRSLVKHSP EQIRTILEI
101: STGDIISTTE RLQQELEVIT QRQEIVSCFL RDYQLSNEEI HALREEDIDE KFFKALLHVQ EIHSNCKVLL RTHHQRAGLE LMDMMSVYQE GAYERLCRWV
201: QVECKKLGDT DNPEVSELLK KAVRCLKERP VLFKYCAEEV ANMRHHALFR RFISALTRGG PGGLPRPIEV HAHDPLRYVG DMLGWLHQAL ASERELIAAL
301: LDPDAISDSG PANRRHSVRE GDSSKGESDF TFVLDRIFEG ACRPFKVRVE QVLQSQPSLI VSYKLSNTLE FYGYTISELL GVDTSLCNTI WSLRDATQRT
401: FFNILKSRGE KLLRYPPLVA VDLSPPPAVR EGVSLLLELI STYNSMMVSA SGKGLNFDPV ISAILDPIIQ MCEQAAEAQK SKGALARRGR TSSEPMGSKR
501: DSISVDAILS KKSSTSVLSG ESSSKVYLIN CLSAIEEPLM DQEVATSYVN NLHSMIETHT RALVDKEADS ILSKCGLSSK MPYLKNYSST DGNDDARPLA
601: DVVETSPQML LECLKAFYGI VTGTEGSLPE FEQLQVPRLR SDACYGLARA LAEAYELIYR AVMDPKNCYP DPRSLVKHSP EQIRTILEI
001: MASTVGLAPG LSRKLKKVLD CRTDSPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLNAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
Arabidopsis Description
At1g31780 [Source:UniProtKB/TrEMBL;Acc:Q6NMI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.