Factsheet for Bra023203.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006136.1-P
Bra014509.1-P
Bra018081.1-P
Bra023354.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31780.1	Bra018081.1-P	AT3G48150.1	21798944
AT1G31780.1	Bra033769.1-P	AT3G48150.1	21798944
AT1G31780.1	Bra014509.1-P	AT3G60150.1	21798944
AT1G31780.1	Bra006136.1-P	AT5G11980.1	21798944
AT1G31780.1	Bra023354.1-P	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49154	Canola	plastid	99.85	99.85
CDY12296	Canola	plastid	99.56	99.56
AT1G31780.1	Thale cress	cytosol	94.42	94.56
VIT_02s0012g00920.t01	Wine grape	mitochondrion	74.6	73.62
KRH28986	Soybean	cytosol, mitochondrion, nucleus	73.72	72.44
Solyc08g075440.2.1	Tomato	plastid	73.13	72.07
KRH76471	Soybean	cytosol, mitochondrion, nucleus	45.08	71.9
PGSC0003DMT400004938	Potato	cytosol	53.6	71.71
OQU92971	Sorghum	mitochondrion	69.16	68.66
TraesCS4A01G062100.1	Wheat	mitochondrion	68.87	68.07
TraesCS4D01G248500.1	Wheat	mitochondrion	68.87	68.07
HORVU4Hr1G066300.1	Barley	mitochondrion	68.58	67.78
TraesCS4B01G238800.2	Wheat	mitochondrion	68.58	67.78
GSMUA_Achr8P14460_001	Banana	mitochondrion	68.14	66.1
Zm00001d028279_P001	Maize	mitochondrion	68.58	66.05
Os03t0225600-01	Rice	cytosol	9.69	57.89
KRG90345	Soybean	cytosol	5.29	54.55
Zm00001d048022_P001	Maize	cytosol	8.08	50.46

Protein Annotations

EnsemblPlants:Bra023203.1	EnsemblPlants:Bra023203.1-P	EnsemblPlantsGene:Bra023203	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150
GO:GO:0017119	InterPro:COG6	PANTHER:PTHR21506	PFAM:PF06419	SEG:seg	SMART:SM01087
UniParc:UPI00025423E1	UniProt:M4E352	MapMan:22.6.2.6	:	:	:

Description

AT1G31780 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 281 Blast hits to 279 proteins in 131 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 106; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

Coordinates

chrA09:-:20726648..20729411

Molecular Weight (calculated)

75808.6 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.253

Length

681 amino acids

Sequence
(BLAST)

001: MASTVGLAPG LSRKLKKVLE CRTDTPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLSAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AETTSDIIST TERLKQELEV TTQRQEIVGC FLRDYQLSNE EIKALREDEL DESFFQALSH VQEIHSNCKL LLRTHHQRAG LELMGVMAMY QEGAYERLCR
201: WVQAECRKLG DTDNPEVGDL LRTAVRCLKE KPALFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADY KSTAKNTAEN DSLKAAESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA IDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKMSGQLTRR SRTSSDSSQL
501: TSVDALLSSS SSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG SMIENHINLL VQKEVDTLLQ RCGLSDKMQI FRSYTTTELA LSGRQETSPA
601: VLSECLKAFF GLVLGSEGSL PEFEQIQVPK LRSEACVRVA KTLAEDYEVI YRAVTDQQNG YPDPKSLARH PPDQIRTILG I

Best Arabidopsis Sequence Match ( AT1G31780.1 )
(BLAST)

001: MASTVGLAPG LSRKLKKVLD CRTDSPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLNAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI

Arabidopsis Description

At1g31780 [Source:UniProtKB/TrEMBL;Acc:Q6NMI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.