Factsheet for Os03t0225600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os03t0590700-01
Os06t0679100-00
Os10t0571100-01
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31780.1	Os02t0656300-01	AT3G48150.1	21798944
AT1G31780.1	Os06t0679100-00	AT3G48150.1	21798944
AT1G31780.1	Os03t0590700-01	AT3G60150.1	21798944
AT1G31780.1	Os10t0571100-01	AT3G60150.1	21798944
AT1G31780.1	Os12t0538300-01	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G066300.1	Barley	mitochondrion	93.86	15.53
TraesCS4D01G248500.1	Wheat	mitochondrion	93.86	15.53
TraesCS4B01G238800.2	Wheat	mitochondrion	92.11	15.24
TraesCS4A01G062100.1	Wheat	mitochondrion	91.23	15.09
OQU92971	Sorghum	mitochondrion	88.6	14.72
Zm00001d028279_P001	Maize	mitochondrion	86.84	14.0
PGSC0003DMT400004938	Potato	cytosol	51.75	11.59
GSMUA_Achr8P14460_001	Banana	mitochondrion	64.04	10.4
KRH28986	Soybean	cytosol, mitochondrion, nucleus	61.4	10.1
AT1G31780.1	Thale cress	cytosol	58.77	9.85
VIT_02s0012g00920.t01	Wine grape	mitochondrion	58.77	9.71
Bra023203.1-P	Field mustard	plastid	57.89	9.69
CDY49154	Canola	plastid	57.89	9.69
CDY12296	Canola	plastid	56.14	9.4
Solyc08g075440.2.1	Tomato	plastid	50.88	8.39
KRH76471	Soybean	cytosol, mitochondrion, nucleus	2.63	0.7
KRG90345	Soybean	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os03t0225600-01	EnsemblPlantsGene:Os03g0225600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150	GO:GO:0017119	InterPro:COG6
PANTHER:PTHR21506	PFAM:PF06419	ProteinID:BAF11348.1	ProteinID:BAS83055.1	UniParc:UPI0000E11FB1	UniProt:Q0DTU0
MapMan:35.2	:	:	:	:	:

Description

Conserved oligomeric complex COG6 family protein. (Os03t0225600-01)

Coordinates

chr3:+:6587240..6587714

Molecular Weight (calculated)

12710.2 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.286

Length

114 amino acids

Sequence
(BLAST)

001: GLSNKMPYIK DYSSTGSKDD ARPLADIVET SPQMLLECLK AFYGLVTGTE GSLPEFEQLQ VPRLRSDACY GLARALAEAY ELIYKAVVDP KNCYPDPRSL
101: VKHSPEQIRT ILEI

Best Arabidopsis Sequence Match ( AT1G31780.1 )
(BLAST)

001: MASTVGLAPG LSRKLKKVLD CRTDSPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLNAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI

Arabidopsis Description

At1g31780 [Source:UniProtKB/TrEMBL;Acc:Q6NMI3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.