Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os12t0540700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60150.1 | Os12t0540700-01 | AT3G21400.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74665 | Canola | cytosol | 64.79 | 45.1 |
| TraesCS1D01G216000.1 | Wheat | mitochondrion | 77.46 | 31.79 |
| TraesCS1B01G226600.1 | Wheat | mitochondrion | 77.46 | 31.79 |
| TraesCS1A01G213100.1 | Wheat | mitochondrion | 77.46 | 31.79 |
| Solyc01g088350.2.1 | Tomato | mitochondrion | 76.06 | 31.4 |
| VIT_15s0021g00450.t01 | Wine grape | mitochondrion | 74.65 | 30.81 |
| EER94458 | Sorghum | cytosol, plastid | 83.1 | 29.5 |
| Bra004843.1-P | Field mustard | mitochondrion | 70.42 | 29.41 |
| CDX74663 | Canola | mitochondrion | 70.42 | 29.41 |
| KRH66350 | Soybean | mitochondrion | 71.83 | 29.31 |
| GSMUA_Achr1P00650_001 | Banana | cytosol | 77.46 | 29.26 |
| Zm00001d047057_P001 | Maize | mitochondrion, plastid | 78.87 | 29.02 |
| CDY47676 | Canola | mitochondrion | 69.01 | 28.82 |
| AT2G44525.1 | Thale cress | mitochondrion | 69.01 | 28.82 |
| CDY42670 | Canola | mitochondrion | 64.79 | 28.22 |
| CDX89051 | Canola | mitochondrion | 64.79 | 28.22 |
| Bra014509.1-P | Field mustard | mitochondrion | 64.79 | 28.22 |
| AT3G60150.1 | Thale cress | mitochondrion | 66.2 | 27.65 |
| Zm00001d030019_P001 | Maize | mitochondrion | 80.28 | 27.14 |
| Os10t0571100-01 | Rice | mitochondrion | 9.86 | 5.79 |
Protein Annotations
| EnsemblPlants:Os03t0590700-01 | EnsemblPlantsGene:Os03g0590700 | Gene3D:3.40.1230.10 | InterPro:IPR036748 | InterPro:MTH938-like_sf | InterPro:NDUFAF3/AAMDC |
| PANTHER:PTHR21192 | PANTHER:PTHR21192:SF2 | PFAM:PF04430 | ProteinID:BAS85126.1 | SUPFAM:SSF64076 | UniParc:UPI000393A313 |
| UniProt:A0A0P0VZT1 | MapMan:35.2 | : | : | : | : |
Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 domain containing protein. (Os03t0590700-01)
Coordinates
chr3:+:21881938..21885330
Molecular Weight (calculated)
7614.2 Da
IEP (calculated)
7.039
GRAVY (calculated)
0.070
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: HHLVCHASPE ILILGCGRHI QPISPELHKF IQSTGMKLEA VDSRNAASTY NILNEEGRPV AAALLPCGVT S
001: MAMRLKSMAT LPKLIQSMRK EVPKHSNPVL PSLRRAFSLY DQINLIDNVP EDQLRFQEFN DTSFTVNGVK YEGSLLCVGN LLMSWSPRKF SEITTDSLSI
101: FQTVRPIPEL LIVGCGRDIH PVTPEVRQFV KSLGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVTS
101: FQTVRPIPEL LIVGCGRDIH PVTPEVRQFV KSLGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVTS
Arabidopsis Description
At2g44525 [Source:UniProtKB/TrEMBL;Acc:Q8RUX8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.