CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12114
KRH37123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60150.1	KRH12114	AT3G21400.1	21798944
AT3G60150.1	KRH37123	AT3G21400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00450.t01	Wine grape	mitochondrion	79.31	80.23
Solyc01g088350.2.1	Tomato	mitochondrion	72.99	73.84
CDY47676	Canola	mitochondrion	71.26	72.94
AT2G44525.1	Thale cress	mitochondrion	71.26	72.94
Os03t0590700-01	Rice	cytosol	29.31	71.83
Bra004843.1-P	Field mustard	mitochondrion	69.54	71.18
CDX74663	Canola	mitochondrion	69.54	71.18
CDX89051	Canola	mitochondrion	66.67	71.17
AT3G60150.1	Thale cress	mitochondrion	68.97	70.59
Bra014509.1-P	Field mustard	mitochondrion	66.09	70.55
CDY42670	Canola	mitochondrion	66.09	70.55
TraesCS1A01G213100.1	Wheat	mitochondrion	68.39	68.79
TraesCS1D01G216000.1	Wheat	mitochondrion	67.82	68.21
TraesCS1B01G226600.1	Wheat	mitochondrion	67.82	68.21
GSMUA_Achr1P00650_001	Banana	cytosol	68.97	63.83
Os10t0571100-01	Rice	mitochondrion	42.53	61.16
Zm00001d047057_P001	Maize	mitochondrion, plastid	66.67	60.1
EER94458	Sorghum	cytosol, plastid	68.39	59.5
CDX74665	Canola	cytosol	33.91	57.84
Zm00001d030019_P001	Maize	mitochondrion	64.94	53.81

Protein Annotations

EntrezGene:100816956	Gene3D:3.40.1230.10	MapMan:35.2	EMBL:ACUP02001941	EMBL:BT099421	UniProt:C6TNT9
EnsemblPlantsGene:GLYMA_03G100700	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0032981	InterPro:IPR036748
EnsemblPlants:KRH66350	ProteinID:KRH66350	ProteinID:KRH66350.1	InterPro:MTH938-like_sf	InterPro:NDUF3	InterPro:NDUFAF3/AAMDC
PFAM:PF04430	PANTHER:PTHR21192	PANTHER:PTHR21192:SF2	SUPFAM:SSF64076	UniParc:UPI0001B1710C	:

Description

hypothetical protein

Coordinates

chr3:+:28973240..28977426

Molecular Weight (calculated)

19432.6 Da

IEP (calculated)

9.550

GRAVY (calculated)

-0.122

Length

174 amino acids

Sequence
(BLAST)

001: MAVRQRAVSA LPTLLRTLRK EPLKPRNHAH VNALPSLRRA FSLYDQINLI DQVPEDQLRF QGYNDTGFTV NGVEYEGSLL CVGNLLMSWK PKKFSEITAD
101: SLSIFQIVRP IPEILIIGCG KNIQHVDPEL RRFIRSTGIK LEAVDSRNAA STYNILNEEG RIVAAALLPH GVSS

Best Arabidopsis Sequence Match ( AT2G44525.1 )
(BLAST)

001: MAMRLKSMAT LPKLIQSMRK EVPKHSNPVL PSLRRAFSLY DQINLIDNVP EDQLRFQEFN DTSFTVNGVK YEGSLLCVGN LLMSWSPRKF SEITTDSLSI
101: FQTVRPIPEL LIVGCGRDIH PVTPEVRQFV KSLGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVTS

Arabidopsis Description

At2g44525 [Source:UniProtKB/TrEMBL;Acc:Q8RUX8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.