CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74663	Canola	mitochondrion	97.06	97.06
AT2G44525.1	Thale cress	mitochondrion	92.35	92.35
CDX89051	Canola	mitochondrion	84.12	87.73
CDY42670	Canola	mitochondrion	84.12	87.73
CDX74665	Canola	cytosol	43.53	72.55
KRH66350	Soybean	mitochondrion	72.94	71.26
VIT_15s0021g00450.t01	Wine grape	mitochondrion	70.59	69.77
Solyc01g088350.2.1	Tomato	mitochondrion	70.59	69.77
Os03t0590700-01	Rice	cytosol	28.82	69.01
TraesCS1D01G216000.1	Wheat	mitochondrion	64.12	63.01
TraesCS1A01G213100.1	Wheat	mitochondrion	63.53	62.43
TraesCS1B01G226600.1	Wheat	mitochondrion	63.53	62.43
GSMUA_Achr1P00650_001	Banana	cytosol	65.88	59.57
Zm00001d047057_P001	Maize	mitochondrion, plastid	62.35	54.92
Os10t0571100-01	Rice	mitochondrion	38.24	53.72
EER94458	Sorghum	cytosol, plastid	61.76	52.5
Zm00001d030019_P001	Maize	mitochondrion	59.41	48.1

Protein Annotations

EnsemblPlants:CDY47676	EnsemblPlantsGene:GSBRNA2T00087917001	Gene3D:3.40.1230.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0032981	InterPro:IPR036748	InterPro:MTH938-like_sf	InterPro:NDUF3	InterPro:NDUFAF3/AAMDC	PANTHER:PTHR21192
PANTHER:PTHR21192:SF2	PFAM:PF04430	ProteinID:CDY47676	ProteinID:CDY47676.1	SUPFAM:SSF64076	UniParc:UPI0004EE37D6
UniProt:A0A078ICS9	MapMan:35.2	:	:	:	:

Description

BnaC04g03830DBnaC04g03830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICS9]

Coordinates

chrLK032729:-:12758..14097

Molecular Weight (calculated)

19009.0 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.121

Length

170 amino acids

Sequence
(BLAST)

001: MATRLKSMAT LPKLIQTMRN EAPKHSNPVL PSLRRAFSLY DQINLIDNVP EDQLRFQEFN ETSFTVNGVK YEGSLLCVGN LLMSWTPRQF SDITPDSLSI
101: FQTVRPIPEL LIVGCGRNIH PVTPELRQFV KSIGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVSS

Best Arabidopsis Sequence Match ( AT2G44525.1 )
(BLAST)

001: MAMRLKSMAT LPKLIQSMRK EVPKHSNPVL PSLRRAFSLY DQINLIDNVP EDQLRFQEFN DTSFTVNGVK YEGSLLCVGN LLMSWSPRKF SEITTDSLSI
101: FQTVRPIPEL LIVGCGRDIH PVTPEVRQFV KSLGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVTS

Arabidopsis Description

At2g44525 [Source:UniProtKB/TrEMBL;Acc:Q8RUX8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.