Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES16100 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60150.1 | EES16100 | AT3G21400.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G216000.1 | Wheat | mitochondrion | 74.0 | 85.55 |
| TraesCS1A01G213100.1 | Wheat | mitochondrion | 73.5 | 84.97 |
| Zm00001d047057_P001 | Maize | mitochondrion, plastid | 81.5 | 84.46 |
| TraesCS1B01G226600.1 | Wheat | mitochondrion | 73.0 | 84.39 |
| Os10t0571100-01 | Rice | mitochondrion | 50.5 | 83.47 |
| Os03t0590700-01 | Rice | cytosol | 29.5 | 83.1 |
| Zm00001d030019_P001 | Maize | mitochondrion | 86.0 | 81.9 |
| KRH66350 | Soybean | mitochondrion | 59.5 | 68.39 |
| GSMUA_Achr1P00650_001 | Banana | cytosol | 63.5 | 67.55 |
| VIT_15s0021g00450.t01 | Wine grape | mitochondrion | 57.0 | 66.28 |
| Solyc01g088350.2.1 | Tomato | mitochondrion | 55.5 | 64.53 |
| AT2G44525.1 | Thale cress | mitochondrion | 54.0 | 63.53 |
| CDY42670 | Canola | mitochondrion | 51.5 | 63.19 |
| CDX89051 | Canola | mitochondrion | 51.5 | 63.19 |
| Bra014509.1-P | Field mustard | mitochondrion | 51.5 | 63.19 |
| AT3G60150.1 | Thale cress | mitochondrion | 53.5 | 62.94 |
| CDX74663 | Canola | mitochondrion | 53.0 | 62.35 |
| Bra004843.1-P | Field mustard | mitochondrion | 53.0 | 62.35 |
| CDY47676 | Canola | mitochondrion | 52.5 | 61.76 |
| CDX74665 | Canola | cytosol | 27.5 | 53.92 |
Protein Annotations
| EnsemblPlants:EER94458 | EnsemblPlantsGene:SORBI_3001G290700 | EntrezGene:8055616 | Gene3D:3.40.1230.10 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0032981 | InterPro:IPR036748 | InterPro:MTH938-like_sf | InterPro:NDUF3 | InterPro:NDUFAF3/AAMDC |
| PANTHER:PTHR21192 | PANTHER:PTHR21192:SF2 | PFAM:PF04430 | ProteinID:EER94458 | ProteinID:EER94458.1 | RefSeq:XP_002467460.1 |
| SUPFAM:SSF64076 | unigene:Sbi.15184 | UniParc:UPI0001A82EB8 | UniProt:C5WRD5 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr1:-:56771925..56776200
Molecular Weight (calculated)
22274.0 Da
IEP (calculated)
9.515
GRAVY (calculated)
-0.169
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNSLTLLER PAPAEEPTGR RSRREAMAAV RGQKALVALP QLVKSLRSDP VSGSARLRHL PSLRRTFSLY DQINLIDSVP EDELRFQSYD DTGFKINNVK
101: YEGSLLIVEN KIMTWAPKTF SEITAESLSI FKVVHPIPEI LILGCGRHIQ LVSPELRKFI RSTGMKLEAV DSRNAASTYN ILNEEGRPVA AAVLPFGVTC
101: YEGSLLIVEN KIMTWAPKTF SEITAESLSI FKVVHPIPEI LILGCGRHIQ LVSPELRKFI RSTGMKLEAV DSRNAASTYN ILNEEGRPVA AAVLPFGVTC
001: MAMRLKSMAT LPKLIQSMRK EVPKHSNPVL PSLRRAFSLY DQINLIDNVP EDQLRFQEFN DTSFTVNGVK YEGSLLCVGN LLMSWSPRKF SEITTDSLSI
101: FQTVRPIPEL LIVGCGRDIH PVTPEVRQFV KSLGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVTS
101: FQTVRPIPEL LIVGCGRDIH PVTPEVRQFV KSLGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVTS
Arabidopsis Description
At2g44525 [Source:UniProtKB/TrEMBL;Acc:Q8RUX8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.