Factsheet for Zm00001d030019_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d023865_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60150.1	Zm00001d023865_P001	AT3G21400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94458	Sorghum	cytosol, plastid	81.9	86.0
TraesCS1D01G216000.1	Wheat	mitochondrion	66.19	80.35
TraesCS1A01G213100.1	Wheat	mitochondrion	66.19	80.35
Os03t0590700-01	Rice	cytosol	27.14	80.28
TraesCS1B01G226600.1	Wheat	mitochondrion	65.71	79.77
Zm00001d047057_P001	Maize	mitochondrion, plastid	72.86	79.27
Os10t0571100-01	Rice	mitochondrion	43.81	76.03
GSMUA_Achr1P00650_001	Banana	cytosol	59.05	65.96
KRH66350	Soybean	mitochondrion	53.81	64.94
Solyc01g088350.2.1	Tomato	mitochondrion	51.9	63.37
VIT_15s0021g00450.t01	Wine grape	mitochondrion	51.43	62.79
AT2G44525.1	Thale cress	mitochondrion	49.05	60.59
AT3G60150.1	Thale cress	mitochondrion	48.57	60.0
CDY42670	Canola	mitochondrion	46.19	59.51
CDX89051	Canola	mitochondrion	46.19	59.51
Bra014509.1-P	Field mustard	mitochondrion	46.19	59.51
CDY47676	Canola	mitochondrion	48.1	59.41
CDX74663	Canola	mitochondrion	47.62	58.82
Bra004843.1-P	Field mustard	mitochondrion	47.62	58.82
CDX74665	Canola	cytosol	25.24	51.96

Protein Annotations

EnsemblPlants:Zm00001d030019_P001	EnsemblPlants:Zm00001d030019_T001	EnsemblPlantsGene:Zm00001d030019	Gene3D:3.40.1230.10	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0032981	InterPro:IPR036748	InterPro:MTH938-like_sf	InterPro:NDUF3	InterPro:NDUFAF3/AAMDC
PANTHER:PTHR21192	PANTHER:PTHR21192:SF2	PFAM:PF04430	ProteinID:ONL99995.1	SEG:seg	SUPFAM:SSF64076
UniParc:UPI000844507E	UniProt:A0A1D6K8Z7	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1:+:99940331..99944552

Molecular Weight (calculated)

22939.6 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.132

Length

210 amino acids

Sequence
(BLAST)

001: MQNSPTPLDS GTTAPAEEPT GRRSGMGAMA AARGQKALVA LPQLVKSLRS DPVSGSARLR HLPSLRRTFS LYDQINLIDS VPEDELRFQS YDDTGFKINN
101: IKYEGSLLIV ENKIMTWAPK TFSEITAESM QLEFGAVSLL PFVCHCVDEI LILGCGRHIQ PVSPELRKFI RSTGMKLEAV DSRNAASTYN ILNEEGRPVA
201: AAVLPYGVAC

Best Arabidopsis Sequence Match ( AT2G44525.1 )
(BLAST)

001: MAMRLKSMAT LPKLIQSMRK EVPKHSNPVL PSLRRAFSLY DQINLIDNVP EDQLRFQEFN DTSFTVNGVK YEGSLLCVGN LLMSWSPRKF SEITTDSLSI
101: FQTVRPIPEL LIVGCGRDIH PVTPEVRQFV KSLGMKLETV DSRNAASTYN ILNEEGRVVA AALLPYGVTS

Arabidopsis Description

At2g44525 [Source:UniProtKB/TrEMBL;Acc:Q8RUX8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.