CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32427
CDY48887
CDY51444
CDY55284

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60150.1	CDY32427	AT3G21400.1	21798944
AT3G60150.1	CDY48887	AT3G21400.1	21798944
AT3G60150.1	CDY51444	AT3G21400.1	21798944
AT3G60150.1	CDY55284	AT3G21400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89051	Canola	mitochondrion	98.16	98.16
AT3G60150.1	Thale cress	mitochondrion	90.8	87.06
CDY47676	Canola	mitochondrion	87.73	84.12
CDX74663	Canola	mitochondrion	87.12	83.53
Solyc01g088350.2.1	Tomato	mitochondrion	71.78	68.02
VIT_15s0021g00450.t01	Wine grape	mitochondrion	70.55	66.86
CDX74665	Canola	cytosol	41.72	66.67
KRH66350	Soybean	mitochondrion	70.55	66.09
Os03t0590700-01	Rice	cytosol	28.22	64.79
TraesCS1D01G216000.1	Wheat	mitochondrion	63.8	60.12
TraesCS1A01G213100.1	Wheat	mitochondrion	63.19	59.54
TraesCS1B01G226600.1	Wheat	mitochondrion	63.19	59.54
GSMUA_Achr1P00650_001	Banana	cytosol	66.26	57.45
Zm00001d047057_P001	Maize	mitochondrion, plastid	63.19	53.37
Os10t0571100-01	Rice	mitochondrion	38.65	52.07
EER94458	Sorghum	cytosol, plastid	63.19	51.5
Zm00001d030019_P001	Maize	mitochondrion	59.51	46.19

Protein Annotations

EnsemblPlants:CDY42670	EnsemblPlantsGene:GSBRNA2T00075189001	Gene3D:3.40.1230.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0032981	InterPro:IPR036748	InterPro:MTH938-like_sf	InterPro:NDUF3	InterPro:NDUFAF3/AAMDC	PANTHER:PTHR21192
PANTHER:PTHR21192:SF2	PFAM:PF04430	ProteinID:CDY42670	ProteinID:CDY42670.1	SUPFAM:SSF64076	UniParc:UPI0004EE2A15
UniProt:A0A078HW29	MapMan:35.2	:	:	:	:

Description

BnaC04g22360DBnaC04g22360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW29]

Coordinates

chrLK032531:+:165982..167175

Molecular Weight (calculated)

18246.0 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.112

Length

163 amino acids

Sequence
(BLAST)

001: MATLPKLIRA MRNGSPKHNN LVLPSLRRAF SLYDQINLID NVPEDQLRFQ EFDETSFTVN GVKYDGSLLC VGNLLMSWSP RSFSEITTDS LSIFQTVRPI
101: PELLIVGCGR YNHPVNPQVR QFVKSIGMKL ETLDSRNAAS TYNILNEEGR IVAAALLPYG VTS

Best Arabidopsis Sequence Match ( AT3G60150.1 )
(BLAST)

001: MAVRQKAMAT LPKLIQSMRN EVTKQPSLVL PSLRRAFSLY DQINLIDNVP EDQLRFQEFD ETSFTVNGVK YEGSLLCVGN LLMSWSPRYF SDITTDSLSI
101: FQTVRPIPEL LIVGCGRYNH PLNPQVRQFV KSIGMKLETV DSRNAASTYN ILNEEGRIVA AALLPYGVTS

Arabidopsis Description

NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598) [Source:UniProtKB/TrEMBL;Acc:Q682I4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.