CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001828.1-P	Field mustard	mitochondrion	100.0	100.0
CDY32427	Canola	mitochondrion	94.24	94.24
AT3G21400.1	Thale cress	nucleus	83.25	84.57
CDY55284	Canola	nucleus	72.25	77.97
CDY51444	Canola	cytosol	62.83	71.01
Solyc01g067080.2.1	Tomato	cytosol	37.7	63.16
VIT_05s0020g01370.t01	Wine grape	mitochondrion, nucleus	50.79	50.52
PGSC0003DMT400058346	Potato	mitochondrion	47.12	49.45
KRH12114	Soybean	mitochondrion	48.17	47.18
KRH37123	Soybean	mitochondrion	45.03	45.03
TraesCS5B01G100200.1	Wheat	mitochondrion	43.46	43.23
TraesCS5A01G094100.1	Wheat	mitochondrion	43.98	43.08
GSMUA_AchrUn_...	Banana	cytosol	34.55	42.04
EES16100	Sorghum	plastid	39.79	39.79
Os12t0540700-01	Rice	cytosol, mitochondrion, nucleus	37.17	38.8
Zm00001d023865_P001	Maize	mitochondrion	40.31	30.32

Protein Annotations

EnsemblPlants:CDY48887	EnsemblPlantsGene:GSBRNA2T00091954001	GO:A0A078IFV8	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0032981	InterPro:NDUFAF4	PANTHER:PTHR36759	PFAM:PF06784	ProteinID:CDY48887	ProteinID:CDY48887.1
UniParc:UPI000254063D	UniProt:A0A078IFV8	MapMan:35.2	:	:	:

Description

BnaA03g36260DBnaA03g36260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFV8]

Coordinates

chrLK032799:-:58894..60318

Molecular Weight (calculated)

21319.4 Da

IEP (calculated)

10.211

GRAVY (calculated)

-0.861

Length

191 amino acids

Sequence
(BLAST)

001: MGQQLRRAVG KVKEVERFPS STSRVAAHRR SLPKEELAAA KSPSTAAVDG VSDEEGRRTT SDDNVLEERD PKYDTMLNQM VGRIKAKPGG KAEMGEASVV
101: ESSKRPLPKL RNTTPESTRY EEKPVPQGTL NVAQVRHIML LFQGKAQDHS GSMSVEEIAK NYRIDVSQVK KITQFLSLPP EVTDKQKKRY E

Best Arabidopsis Sequence Match ( AT3G21400.1 )
(BLAST)

001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE

Arabidopsis Description

Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.