Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g067080.2.1 | Tomato | cytosol | 36.94 | 50.88 |
| Os12t0540700-01 | Rice | cytosol, mitochondrion, nucleus | 44.59 | 38.25 |
| CDY55284 | Canola | nucleus | 41.4 | 36.72 |
| PGSC0003DMT400058346 | Potato | mitochondrion | 42.04 | 36.26 |
| VIT_05s0020g01370.t01 | Wine grape | mitochondrion, nucleus | 43.95 | 35.94 |
| AT3G21400.1 | Thale cress | nucleus | 42.68 | 35.64 |
| EES16100 | Sorghum | plastid | 43.31 | 35.6 |
| TraesCS5B01G100200.1 | Wheat | mitochondrion | 43.31 | 35.42 |
| KRH12114 | Soybean | mitochondrion | 43.95 | 35.38 |
| Bra031280.1-P | Field mustard | cytosol | 37.58 | 34.91 |
| CDY51444 | Canola | cytosol | 37.58 | 34.91 |
| Bra001828.1-P | Field mustard | mitochondrion | 42.04 | 34.55 |
| CDY48887 | Canola | mitochondrion | 42.04 | 34.55 |
| CDY32427 | Canola | mitochondrion | 42.04 | 34.55 |
| TraesCS5A01G094100.1 | Wheat | mitochondrion | 42.68 | 34.36 |
| KRH37123 | Soybean | mitochondrion | 41.4 | 34.03 |
| Zm00001d023865_P001 | Maize | mitochondrion | 43.95 | 27.17 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP18570_001 | EnsemblPlants:GSMUA_AchrUn_randomT18570_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG18570_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | PANTHER:PTHR36759 | UniParc:UPI0002957E74 | UniProt:M0UAB6 | MapMan:35.2 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18570_001]
Coordinates
chrchrUn_random:-:89003176..89005136
Molecular Weight (calculated)
17613.3 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.468
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MCIFIIEVTE RIKDESGVLE ERDPRYDEML RHMLGKITSR SGGKLEMGEA GIVERYNRPM PKLRSSREEA GASGQKPLPP GTLSVEQVCQ IILLHQGKAV
101: DHPGVMDIQD IANKFGVDPG QVQQITQFMS LPPQDGKRET HLLSCSKSFV SDYVFRQ
101: DHPGVMDIQD IANKFGVDPG QVQQITQFMS LPPQDGKRET HLLSCSKSFV SDYVFRQ
001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
Arabidopsis Description
Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.