Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 1
- cytosol 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51444 | Canola | cytosol | 100.0 | 100.0 |
| Bra001828.1-P | Field mustard | mitochondrion | 71.01 | 62.83 |
| AT3G21400.1 | Thale cress | nucleus | 68.64 | 61.7 |
| Solyc01g067080.2.1 | Tomato | cytosol | 38.46 | 57.02 |
| PGSC0003DMT400058346 | Potato | mitochondrion | 46.15 | 42.86 |
| VIT_05s0020g01370.t01 | Wine grape | mitochondrion, nucleus | 47.93 | 42.19 |
| KRH12114 | Soybean | mitochondrion | 44.97 | 38.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.91 | 37.58 |
| TraesCS5B01G100200.1 | Wheat | mitochondrion | 42.6 | 37.5 |
| KRH37123 | Soybean | mitochondrion | 42.01 | 37.17 |
| TraesCS5A01G094100.1 | Wheat | mitochondrion | 42.6 | 36.92 |
| EES16100 | Sorghum | plastid | 41.42 | 36.65 |
| Os12t0540700-01 | Rice | cytosol, mitochondrion, nucleus | 37.87 | 34.97 |
| Zm00001d023865_P001 | Maize | mitochondrion | 41.42 | 27.56 |
Protein Annotations
Description
AT3G21400 (E=5e-063) | unknown protein
Coordinates
chrA05:+:16391259..16392415
Molecular Weight (calculated)
18807.5 Da
IEP (calculated)
10.561
GRAVY (calculated)
-0.862
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQQLRRAVG RVKEVEKFPS RLDRRSLPKE ELSAGKSPSI NDVSARGSSS DDSERDPQYD TMLNQMVGRI KAKPGGKAEM GEASVVETSK RPLPKLRNTT
101: PESTRYEAKP VPQGTLNVAQ VRHIMLLYQG KAQDHKGPMT LNEIAKNYRI DVSQVQKNHP VPVLATRGY
101: PESTRYEAKP VPQGTLNVAQ VRHIMLLYQG KAQDHKGPMT LNEIAKNYRI DVSQVQKNHP VPVLATRGY
001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
Arabidopsis Description
Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.