Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48887 | Canola | mitochondrion | 84.57 | 83.25 |
| Bra001828.1-P | Field mustard | mitochondrion | 84.57 | 83.25 |
| CDY32427 | Canola | mitochondrion | 84.04 | 82.72 |
| CDY55284 | Canola | nucleus | 70.21 | 74.58 |
| Bra031280.1-P | Field mustard | cytosol | 61.7 | 68.64 |
| CDY51444 | Canola | cytosol | 61.7 | 68.64 |
| Solyc01g067080.2.1 | Tomato | cytosol | 40.43 | 66.67 |
| PGSC0003DMT400058346 | Potato | mitochondrion | 51.6 | 53.3 |
| VIT_05s0020g01370.t01 | Wine grape | mitochondrion, nucleus | 50.53 | 49.48 |
| KRH12114 | Soybean | mitochondrion | 49.47 | 47.69 |
| KRH37123 | Soybean | mitochondrion | 47.34 | 46.6 |
| TraesCS5B01G100200.1 | Wheat | mitochondrion | 43.62 | 42.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.64 | 42.68 |
| TraesCS5A01G094100.1 | Wheat | mitochondrion | 44.15 | 42.56 |
| EES16100 | Sorghum | plastid | 41.49 | 40.84 |
| Os12t0540700-01 | Rice | cytosol, mitochondrion, nucleus | 39.36 | 40.44 |
| Zm00001d023865_P001 | Maize | mitochondrion | 42.02 | 31.1 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821694 | UniProt:A0A178VGR3 | ProteinID:AEE76505.1 | EMBL:AK119036 | ArrayExpress:AT3G21400 |
| EnsemblPlantsGene:AT3G21400 | RefSeq:AT3G21400 | TAIR:AT3G21400 | RefSeq:AT3G21400-TAIR-G | EnsemblPlants:AT3G21400.1 | TAIR:AT3G21400.1 |
| Unigene:At.38066 | ProteinID:BAB03053.1 | EMBL:BT005633 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0032981 |
| InterPro:NDUFAF4 | RefSeq:NP_188777.1 | ProteinID:OAP04092.1 | PFAM:PF06784 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR36759 | UniProt:Q9LIF6 |
| UniParc:UPI000000C6DA | : | : | : | : | : |
Description
Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
Coordinates
chr3:-:7534580..7536523
Molecular Weight (calculated)
21071.1 Da
IEP (calculated)
10.005
GRAVY (calculated)
-0.880
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.