CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48887	Canola	mitochondrion	94.24	94.24
AT3G21400.1	Thale cress	nucleus	82.72	84.04
CDY55284	Canola	nucleus	72.77	78.53
CDY51444	Canola	cytosol	63.87	72.19
Solyc01g067080.2.1	Tomato	cytosol	37.7	63.16
PGSC0003DMT400058346	Potato	mitochondrion	48.17	50.55
VIT_05s0020g01370.t01	Wine grape	mitochondrion, nucleus	50.79	50.52
KRH12114	Soybean	mitochondrion	47.64	46.67
KRH37123	Soybean	mitochondrion	45.03	45.03
TraesCS5B01G100200.1	Wheat	mitochondrion	44.5	44.27
TraesCS5A01G094100.1	Wheat	mitochondrion	44.5	43.59
GSMUA_AchrUn_...	Banana	cytosol	34.55	42.04
EES16100	Sorghum	plastid	41.36	41.36
Os12t0540700-01	Rice	cytosol, mitochondrion, nucleus	38.74	40.44
Zm00001d023865_P001	Maize	mitochondrion	41.88	31.5

Protein Annotations

EnsemblPlants:CDY32427	EnsemblPlantsGene:GSBRNA2T00052031001	GO:A0A078H4L1	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0032981	InterPro:NDUFAF4	PANTHER:PTHR36759	PFAM:PF06784	ProteinID:CDY32427	ProteinID:CDY32427.1
SEG:seg	UniParc:UPI0004EF29C6	UniProt:A0A078H4L1	MapMan:35.2	:	:

Description

BnaC03g42110DBnaC03g42110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4L1]

Coordinates

chrLK032294:-:335078..336338

Molecular Weight (calculated)

21428.5 Da

IEP (calculated)

9.909

GRAVY (calculated)

-0.879

Length

191 amino acids

Sequence
(BLAST)

001: MGQQLRRAVG KVKEVERFPS STSRVVVDRR SFPKEELTAA KSPSTAAVDG VSDEEAQRTT SDDNVLEERD PKYDTMLNQM VGRIKAKPGG KAEMGEASVV
101: ESSKRPLPKL RNTTPESTRY EEKPVPQGTL NVAQVRHIML LYQGKAQDHS GPMSVDEIAK NYRIDVSQVK KITQFLSLPP EVNDKQKKRY E

Best Arabidopsis Sequence Match ( AT3G21400.1 )
(BLAST)

001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE

Arabidopsis Description

Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.