Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51444 | Canola | cytosol | 85.88 | 89.94 |
| CDY32427 | Canola | mitochondrion | 78.53 | 72.77 |
| CDY48887 | Canola | mitochondrion | 77.97 | 72.25 |
| AT3G21400.1 | Thale cress | nucleus | 74.58 | 70.21 |
| Solyc01g067080.2.1 | Tomato | cytosol | 41.81 | 64.91 |
| VIT_05s0020g01370.t01 | Wine grape | mitochondrion, nucleus | 51.41 | 47.4 |
| PGSC0003DMT400058346 | Potato | mitochondrion | 48.59 | 47.25 |
| KRH12114 | Soybean | mitochondrion | 49.15 | 44.62 |
| KRH37123 | Soybean | mitochondrion | 45.76 | 42.41 |
| GSMUA_AchrUn_... | Banana | cytosol | 36.72 | 41.4 |
| TraesCS5B01G100200.1 | Wheat | mitochondrion | 44.07 | 40.62 |
| TraesCS5A01G094100.1 | Wheat | mitochondrion | 44.63 | 40.51 |
| EES16100 | Sorghum | plastid | 42.37 | 39.27 |
| Os12t0540700-01 | Rice | cytosol, mitochondrion, nucleus | 39.55 | 38.25 |
| Zm00001d023865_P001 | Maize | mitochondrion | 42.37 | 29.53 |
Protein Annotations
| EnsemblPlants:CDY55284 | EnsemblPlantsGene:GSBRNA2T00016634001 | GO:A0A078J0D1 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0032981 | InterPro:NDUFAF4 | PANTHER:PTHR36759 | PFAM:PF06784 | ProteinID:CDY55284 | ProteinID:CDY55284.1 |
| UniParc:UPI0004EE9E1D | UniProt:A0A078J0D1 | MapMan:35.2 | : | : | : |
Description
BnaC05g51780DBnaC05g51780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0D1]
Coordinates
chrLK033391:+:6093..7526
Molecular Weight (calculated)
19910.7 Da
IEP (calculated)
10.302
GRAVY (calculated)
-0.974
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQQLRRAVG RVKEVEKFPS RVDRRSLPKE ELSAGKSPSI NDVSARGGSS EDSERDPQYD TMLNQMVGRI KAKPGGKAEM GEASVVETSK RPLPKLRNTT
101: PESTRYEEKP VSQGTLNVAQ VRHIMLLYQG KAQDHNGPMT LNEIAKNYRI DVSQVQKITQ FLSLPPETTD KQKKRYE
101: PESTRYEEKP VSQGTLNVAQ VRHIMLLYQG KAQDHNGPMT LNEIAKNYRI DVSQVQKITQ FLSLPPETTD KQKKRYE
001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
Arabidopsis Description
Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.