CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37123	Soybean	mitochondrion	88.72	90.58
Solyc01g067080.2.1	Tomato	cytosol	35.9	61.4
VIT_05s0020g01370.t01	Wine grape	mitochondrion, nucleus	54.87	55.73
PGSC0003DMT400058346	Potato	mitochondrion	51.28	54.95
AT3G21400.1	Thale cress	nucleus	47.69	49.47
CDY55284	Canola	nucleus	44.62	49.15
Bra001828.1-P	Field mustard	mitochondrion	47.18	48.17
CDY48887	Canola	mitochondrion	47.18	48.17
CDY32427	Canola	mitochondrion	46.67	47.64
Bra031280.1-P	Field mustard	cytosol	38.97	44.97
CDY51444	Canola	cytosol	38.97	44.97
EES16100	Sorghum	plastid	43.08	43.98
GSMUA_AchrUn_...	Banana	cytosol	35.38	43.95
TraesCS5B01G100200.1	Wheat	mitochondrion	43.08	43.75
TraesCS5A01G094100.1	Wheat	mitochondrion	43.08	43.08
Os12t0540700-01	Rice	cytosol, mitochondrion, nucleus	40.0	42.62
Zm00001d023865_P001	Maize	mitochondrion	41.54	31.89

Protein Annotations

EMBL:ACUP02009268	EMBL:BT092673	EnsemblPlants:KRH12114	EnsemblPlantsGene:GLYMA_15G153100	EntrezGene:100527797	PANTHER:PTHR36759
ProteinID:KRH12114	ProteinID:KRH12114.1	SEG:seg	UniParc:UPI0001B15D83	UniProt:C6T5G1	MapMan:35.2

Description

hypothetical protein

Coordinates

chr15:-:12710775..12713895

Molecular Weight (calculated)

21677.8 Da

IEP (calculated)

10.393

GRAVY (calculated)

-0.806

Length

195 amino acids

Sequence
(BLAST)

001: MGQAFRRASG RIRAASEADT SSFSKSKTAV DRQPPPNAAA DKAAQIPKAA EQDVLHTDDR PRVNTDNILE ERDPKFDAML GQMVGRITSK PGGKPEMGEA
101: FVVEKFNRPM PKLRNTKPDF GRNEERPVPA GTLNVAQLRH IILLHEGKAD DYNGRMDAHQ IAEKFRVNVV QIQTILQFLS LPPENSSKDK NKAPR

Best Arabidopsis Sequence Match ( AT3G21400.1 )
(BLAST)

001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE

Arabidopsis Description

Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.