Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16100 | Sorghum | plastid | 69.4 | 66.49 |
| TraesCS5A01G094100.1 | Wheat | mitochondrion | 67.21 | 63.08 |
| TraesCS5B01G100200.1 | Wheat | mitochondrion | 65.57 | 62.5 |
| Solyc01g067080.2.1 | Tomato | cytosol | 31.69 | 50.88 |
| Zm00001d023865_P001 | Maize | mitochondrion | 66.12 | 47.64 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.25 | 44.59 |
| KRH12114 | Soybean | mitochondrion | 42.62 | 40.0 |
| PGSC0003DMT400058346 | Potato | mitochondrion | 39.34 | 39.56 |
| CDY55284 | Canola | nucleus | 38.25 | 39.55 |
| AT3G21400.1 | Thale cress | nucleus | 40.44 | 39.36 |
| CDY32427 | Canola | mitochondrion | 40.44 | 38.74 |
| KRH37123 | Soybean | mitochondrion | 39.89 | 38.22 |
| CDY51444 | Canola | cytosol | 34.97 | 37.87 |
| Bra031280.1-P | Field mustard | cytosol | 34.97 | 37.87 |
| CDY48887 | Canola | mitochondrion | 38.8 | 37.17 |
| Bra001828.1-P | Field mustard | mitochondrion | 38.8 | 37.17 |
| VIT_05s0020g01370.t01 | Wine grape | mitochondrion, nucleus | 38.8 | 36.98 |
Protein Annotations
| EnsemblPlants:Os12t0540700-01 | EnsemblPlantsGene:Os12g0540700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | PANTHER:PTHR36759 | ProteinID:BAT17497.1 | SEG:seg | UniParc:UPI000393AA05 | UniProt:A0A0P0YB51 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved hypothetical protein. (Os12t0540700-01)
Coordinates
chr12:+:21614879..21617352
Molecular Weight (calculated)
19913.8 Da
IEP (calculated)
9.972
GRAVY (calculated)
-0.710
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: LRGAAGRVRA PPTPAPPRPH HLPPAPPSPA GAGGAAAQDR LRVFQDDVTT QPKDAPGVLK ERDPSYDEML KHMVGRITTK PGGKPEMGEA FVVDQYNRPL
101: PRVRTSRPEP GEGGHRQLPP GTISVAHVHE IIQLYQGKSS NHPGPMSVDK IASKFRVEAS VVQNIVQFVS LPQEEHVTKK EEY
101: PRVRTSRPEP GEGGHRQLPP GTISVAHVHE IIQLYQGKSS NHPGPMSVDK IASKFRVEAS VVQNIVQFVS LPQEEHVTKK EEY
001: MGQQLRRAVG KIKEVERSSP SRVSIDRRSL PTEELSAVKS SPSTAAVDGV SDKGRRTSED NVLEERDPKY DTMLNQMVGR IKAKPGGKAE MGEASVVETS
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
101: KRPLPKLRNT TPESTRYEEN PVPQGTLNVA QVRHIMLLFQ GKSQDHHGPM GVNEIAEKYR IDVSQVQKIT QFLSLPQEIT DKQKKQYE
Arabidopsis Description
Dynein beta chain, ciliary protein [Source:UniProtKB/TrEMBL;Acc:Q9LIF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.