Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20363867
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g087650.2.1 | |
| Solyc01g088350.2.1 | |
| Solyc03g113740.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G31780.1 | Solyc03g113740.2.1 | AT3G48150.1 | 21798944 |
| AT1G31780.1 | Solyc01g088350.2.1 | AT3G60150.1 | 21798944 |
| AT1G31780.1 | Solyc01g087650.2.1 | AT5G11980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004938 | Potato | cytosol | 71.64 | 97.25 |
| VIT_02s0012g00920.t01 | Wine grape | mitochondrion | 79.31 | 79.42 |
| KRH28986 | Soybean | cytosol, mitochondrion, nucleus | 76.7 | 76.48 |
| KRH76471 | Soybean | cytosol, mitochondrion, nucleus | 46.89 | 75.88 |
| AT1G31780.1 | Thale cress | cytosol | 72.65 | 73.82 |
| Bra023203.1-P | Field mustard | plastid | 72.07 | 73.13 |
| CDY49154 | Canola | plastid | 72.07 | 73.13 |
| CDY12296 | Canola | plastid | 71.78 | 72.83 |
| OQU92971 | Sorghum | mitochondrion | 68.6 | 69.1 |
| TraesCS4B01G238800.2 | Wheat | mitochondrion | 68.16 | 68.36 |
| TraesCS4D01G248500.1 | Wheat | mitochondrion | 68.16 | 68.36 |
| TraesCS4A01G062100.1 | Wheat | mitochondrion | 68.02 | 68.21 |
| GSMUA_Achr8P14460_001 | Banana | mitochondrion | 69.03 | 67.95 |
| HORVU4Hr1G066300.1 | Barley | mitochondrion | 67.73 | 67.92 |
| Zm00001d028279_P001 | Maize | mitochondrion | 67.73 | 66.2 |
| KRG90345 | Soybean | cytosol | 6.22 | 65.15 |
| Os03t0225600-01 | Rice | cytosol | 8.39 | 50.88 |
| Zm00001d048022_P001 | Maize | cytosol | 7.24 | 45.87 |
Protein Annotations
| EnsemblPlants:Solyc08g075440.2.1 | EnsemblPlantsGene:Solyc08g075440.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006891 | GO:GO:0008150 | GO:GO:0017119 | InterPro:COG6 |
| PANTHER:PTHR21506 | PFAM:PF06419 | SEG:seg | SMART:SM01087 | UniParc:UPI000276B6E5 | UniProt:K4CMR1 |
| MapMan:22.6.2.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:59589018..59595863
Molecular Weight (calculated)
77534.1 Da
IEP (calculated)
5.845
GRAVY (calculated)
-0.260
Length
691 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAPGLSRK LKKVLETRTD TADLLASLNT LSEFYTENTP HSRRNLRSTI EKRSLSINEE FLLSSAAAQK SLDRVEQEVN EIVECCDKIA MALSSCNATT
101: GDIISTTERL KQEFEVTTQR QEIVSCFLRD YQLSPEEINA LREEDLDDNF FKALAHVQEI HANCKVLLRT HHQRAGLELM DMMAMYQEGA YERLCRWVQT
201: ECRRLGDVDN PEVGDLLRTA VRCLKERPVL FKYCAEEVAN MRHNALFRRF ISALTRGGPG GLPRPIEVHA HDPLRYVGDM LGWLHQALAS ERELVLALLD
301: PDASDTRPAS HNYSKGIDSE SEKTESDLTF VLDRIFEGVC RPFKVRVEQV LHSQPNLIIS YKLSNTLEFY FYTISDLLGI ETSLCNTLLV LKEAAQKTFF
401: DILKGRGEKL LRYPPLVAVD LSPPPALREG VSVLLEIIQT HDSMMFPASG KKPDFDPVIS ALLDPIIQMC EQAAEAHKSK GSMHSSRRNR ITSDPSQHRK
501: TSVDALLDGS NSALLTQTSE TPAKIFLINC LCAIQQPLLG HDVASGYAKK LGVMIDNHIN ALVEKEVEAI LRRCDLLTKM SHFRKSLEIN ESSNSIARTP
601: LAEQEDTSPV SVAESLKALF GLILGSETAI PEFEQMQVPR LRSETSVQVA RSLAEAYELI YRAIMDPENG YTDPKSLARH PPDQIRTILG I
101: GDIISTTERL KQEFEVTTQR QEIVSCFLRD YQLSPEEINA LREEDLDDNF FKALAHVQEI HANCKVLLRT HHQRAGLELM DMMAMYQEGA YERLCRWVQT
201: ECRRLGDVDN PEVGDLLRTA VRCLKERPVL FKYCAEEVAN MRHNALFRRF ISALTRGGPG GLPRPIEVHA HDPLRYVGDM LGWLHQALAS ERELVLALLD
301: PDASDTRPAS HNYSKGIDSE SEKTESDLTF VLDRIFEGVC RPFKVRVEQV LHSQPNLIIS YKLSNTLEFY FYTISDLLGI ETSLCNTLLV LKEAAQKTFF
401: DILKGRGEKL LRYPPLVAVD LSPPPALREG VSVLLEIIQT HDSMMFPASG KKPDFDPVIS ALLDPIIQMC EQAAEAHKSK GSMHSSRRNR ITSDPSQHRK
501: TSVDALLDGS NSALLTQTSE TPAKIFLINC LCAIQQPLLG HDVASGYAKK LGVMIDNHIN ALVEKEVEAI LRRCDLLTKM SHFRKSLEIN ESSNSIARTP
601: LAEQEDTSPV SVAESLKALF GLILGSETAI PEFEQMQVPR LRSETSVQVA RSLAEAYELI YRAIMDPENG YTDPKSLARH PPDQIRTILG I
001: MASTVGLAPG LSRKLKKVLD CRTDSPDLVA SLNALSSFYD ENSAHARRNL RSTIEKRALQ INSEFLNAAD STQIALDRVE EEVNALADCC DKIAAALSSS
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
101: AATTSDIIST TERLKQELEV TTQRQEIVNC FLRDYQLSNE EIKALREDEL NENFFQALSH VQEIHSNCKL LLRTHHQRAG LELMDMMAVY QEGAYERLCR
201: WVQAECRKLG DTDNPEVSEL LRTAVRCLKE RPVLFKYCAE EVGNLRHNAL FRRFISALTR GGPGGMPRPI EVHAHDPLRY VGDMLGWLHQ ALASERELVH
301: ALFDIDSADH QSNAKNTSEN IALKAGESDF TFVLDRIFEG VCRPFKVRVE QVLQSQPSLI ISYKLTNTLE FYSYTISDLL GRDTALCNTI GMVKDAAQKT
401: FFDILKTRGE KLLRYPPPVA VDLSPPPAVR EGVSLTLEII ENYNSMMVSA SGEKPAFDPV LSALLDPIIK MCEQAAEAHK SKKSGQLPRR SRTSSDSSQL
501: TSVDALLSSS PSPPQNNETP SKIFLINCLC AIQQPLLRHD VASQYVTNIG LMIENHINLL VQNEVDTLLH KCGLSDKMQI FRSSTSELPL SERQDTSPAM
601: LSECLKAFFG LVLGSEGSLP EFEQIQVPKL RSEACVRVAK TLAEAYEVIY QAVTDQQNGY PDPKSLARHP PDQIRTILGI
Arabidopsis Description
At1g31780 [Source:UniProtKB/TrEMBL;Acc:Q6NMI3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.