CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89333
CDX94330

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57280.1	CDX89333	AT4G26455.1	21798944
AT3G57280.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67684	Canola	plastid	84.65	85.4
CDX88938	Canola	extracellular	42.98	79.67
CDY30992	Canola	plastid	57.89	75.43
AT3G57280.1	Thale cress	plastid	67.11	67.7
CDY06118	Canola	plastid	60.53	63.3
Solyc04g016440.2.1	Tomato	endoplasmic reticulum, peroxisome, plasma membrane, plastid	39.91	63.19
CDX72054	Canola	plastid	60.53	62.16
PGSC0003DMT400021095	Potato	cytosol, nucleus, plasma membrane	46.05	54.69
Solyc10g079260.1.1	Tomato	plastid	51.32	50.87
VIT_00s0252g00030.t01	Wine grape	plastid	47.37	47.16
KRH66851	Soybean	plastid	46.49	46.09
KRG95172	Soybean	mitochondrion	46.05	45.65
PGSC0003DMT400033126	Potato	plastid	44.74	44.74
Zm00001d037138_P001	Maize	extracellular	14.04	39.51
CDY65222	Canola	endoplasmic reticulum, extracellular, vacuole	20.18	38.66
TraesCS2D01G331600.1	Wheat	mitochondrion, plastid	37.28	38.46
CDY71352	Canola	endoplasmic reticulum, extracellular, vacuole	19.74	37.82
CDY19635	Canola	extracellular, plasma membrane, vacuole	19.74	37.82
Os04t0470300-01	Rice	plastid	36.84	37.67
Zm00001d036684_P001	Maize	plastid	15.35	36.08
TraesCS2B01G350900.1	Wheat	plastid	36.84	36.05
TraesCS2A01G331300.1	Wheat	plastid	36.84	36.05
CDY69173	Canola	plasma membrane	19.3	35.77
GSMUA_Achr3P04170_001	Banana	plastid	38.16	35.22
Zm00001d025663_P003	Maize	plastid	33.77	35.16
Zm00001d021040_P001	Maize	golgi, peroxisome, plasma membrane	26.32	35.09
CDY25185	Canola	extracellular, plasma membrane	18.86	34.96
EES12340	Sorghum	plastid	33.33	34.23
GSMUA_Achr9P12790_001	Banana	plastid	36.84	33.87
TraesCS7B01G127500.2	Wheat	plastid	34.21	32.5
TraesCS7A01G219900.2	Wheat	plastid	34.21	32.37
TraesCS7D01G222200.2	Wheat	plastid	34.21	32.37
Os06t0301100-01	Rice	plastid	33.33	32.07
HORVU2Hr1G081780.5	Barley	plastid	34.65	31.85
EER98049	Sorghum	plastid	34.21	30.95
Zm00001d035128_P001	Maize	extracellular	17.11	30.23
Zm00001d018927_P001	Maize	mitochondrion	34.65	29.81
GSMUA_Achr4P01650_001	Banana	mitochondrion	25.0	28.08
Zm00001d031990_P001	Maize	extracellular	17.11	27.46
HORVU7Hr1G045420.1	Barley	cytosol, peroxisome	35.53	26.64
Zm00001d049001_P001	Maize	mitochondrion	20.18	23.12
Zm00001d007235_P001	Maize	plasma membrane	18.42	18.5
CDX82243	Canola	plasma membrane	20.61	17.09
Zm00001d045615_P001	Maize	cytosol, endoplasmic reticulum, plastid	27.63	14.35

Protein Annotations

EnsemblPlants:CDY33831	EnsemblPlantsGene:GSBRNA2T00055287001	Gene3D:1.20.58.1140	GO:A0A078H7J0	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF18	PFAM:PF03647	ProteinID:CDY33831
ProteinID:CDY33831.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEDEF1	UniProt:A0A078H7J0	MapMan:5.8.3

Description

BnaCnng07490DBnaCnng07490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7J0]

Coordinates

chrLK032322:-:287508..289131

Molecular Weight (calculated)

24939.1 Da

IEP (calculated)

10.094

GRAVY (calculated)

0.027

Length

228 amino acids

Sequence
(BLAST)

001: MATKISHLAC FSTTTNRQFR FQTRSFPCLR YRHLSFVVRS VDGDSSETPA SLSYTSEVSK PFVEKTSKKP YSSVDETATI KEIITETVEE HVDTAQPKRA
101: AKIHDFCFGI PYGGLVMSGG LLGFAFSRNL TSLSNGVLYG GGLLALSTLS LKIWRQGKSS FPYILGQAVL SAVVFWKNFT AYSMTKKLFP AGIFAVVSAA
201: MLCFYSYVVL SGGNPPPKKL KPSTSPSH

Best Arabidopsis Sequence Match ( AT3G57280.1 )
(BLAST)

001: MASQISQLAC FSSTNRQFHF QSRSFPCPMI RPQSFVVKSV DGNSSETPAS LSYTAEVSKP VVEKTSKPYS TVDETATNKE SITEPVEEDV ATQPIRAAKI
101: HDFCFGIPYG GLVVSGGLLG FAFSRNLTSL STGVLYGGGL LALSTLSLKI WREGKSSFPY ILGQAVLSAV VFWKNFTAYS MTKKLFPAGV FAVISACMLC
201: FYSYVVLSGG NPPPKKLKPS ATSPSY

Arabidopsis Description

FAX1Protein FATTY ACID EXPORT 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.