CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12559
EES14570
KXG26318
KXG31128
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	KXG26318	AT2G23420.1	21798944
AT2G16800.1	OQU90665	AT2G23420.1	21798944
AT2G16800.1	EES12559	AT3G60600.1	21798944
AT2G16800.1	EES14570	AT3G60600.1	21798944
AT2G16800.1	KXG31128	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027721_P001	Maize	plastid	79.5	80.62
Os03t0156700-01	Rice	mitochondrion	70.64	71.63
CDY17509	Canola	extracellular	16.07	71.6
TraesCS4A01G033400.1	Wheat	mitochondrion	68.7	67.95
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	68.42	67.86
TraesCS4D01G271200.1	Wheat	plastid	68.98	67.85
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.21	61.9
KRH39780	Soybean	plastid	51.8	56.67
Bra037287.1-P	Field mustard	plastid	56.51	55.74
CDY47481	Canola	plastid	56.51	55.74
Bra034673.1-P	Field mustard	mitochondrion	13.85	55.56
CDX76312	Canola	cytosol	8.86	55.17
Bra011583.1-P	Field mustard	plastid	54.29	55.06
CDX69110	Canola	plastid	55.12	54.97
CDY26789	Canola	plastid	55.68	54.47
PGSC0003DMT400015782	Potato	plastid	55.68	53.89
VIT_03s0038g02470.t01	Wine grape	plastid	56.51	53.4
KRH24328	Soybean	plastid	54.85	53.37
Solyc01g111620.2.1	Tomato	plastid	55.68	53.32
GSMUA_Achr1P07500_001	Banana	plastid	51.52	52.99
HORVU4Hr1G072520.2	Barley	plastid	65.93	52.54
AT2G16800.1	Thale cress	plastid	54.02	52.42
KRH51392	Soybean	plastid	53.74	52.29
Solyc08g005980.2.1	Tomato	plastid	55.4	52.22
EER89091	Sorghum	mitochondrion	54.29	51.99
CDY52650	Canola	plastid	54.57	51.98
VIT_18s0001g14840.t01	Wine grape	plastid	54.57	51.44
PGSC0003DMT400038459	Potato	plastid	53.74	50.92
AT4G35080.3	Thale cress	plastid	54.85	50.9
KRH60695	Soybean	plastid	52.91	50.4
GSMUA_AchrUn_...	Banana	plastid	41.0	48.05
CDY17508	Canola	extracellular	19.94	30.64

Protein Annotations

EnsemblPlants:EER92833	EnsemblPlantsGene:SORBI_3001G499300	EntrezGene:8080534	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:EER92833	ProteinID:EER92833.1	RefSeq:XP_002465835.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A82B3C	UniProt:C5WXT5	MapMan:24.2.6.3	:

Description

hypothetical protein

Coordinates

chr1:+:76877451..76880555

Molecular Weight (calculated)

37835.6 Da

IEP (calculated)

10.254

GRAVY (calculated)

0.406

Length

361 amino acids

Sequence
(BLAST)

001: MERLISTPTS SPSPSQTRIR GPLLLPSRRL PAAAAWPRLR CPPTRPGAIA LASPLRHEAL SAAPEEARSD PPPTPPAAVG SPSKLLGSLL PKASTAALFL
101: LMTLVTSSLH SGLPAYASMQ PVAKTGGRLF TTEILSSGWA GFLAGCLHTL SGPDHLVALA PLSIGRSRIE SGLVGALWGC GHDAGQVIFG LLFLLLKDRL
201: HIEVFRAWGT RVVGLTLLII GAMGVREASE VQESSLVLEG IDANMSSNDP LQSPSTPRKK KVGFATFATG VVHGLQPDAL LMVLPALALP SRFAGAAFLV
301: MFLVGTVFSM GSYTAFVGSC SEALKEKVPR ITEKLTWAAS LVAIGMGLAL LVGQFFGFSL Y

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.