CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX92368
CDY09128
CDY35676
CDY41153
CDY46076
CDY48365
CDY63965

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	CDY46076	AT2G23420.1	21798944
AT2G16800.1	CDY63965	AT2G23420.1	21798944
AT2G16800.1	CDX67837	AT3G60600.1	21798944
AT2G16800.1	CDX71796	AT3G60600.1	21798944
AT2G16800.1	CDX89063	AT3G60600.1	21798944
AT2G16800.1	CDY41153	AT3G60600.1	21798944
AT2G16800.1	CDY48365	AT3G60600.1	21798944
AT2G16800.1	CDX70995	AT5G22290.1	21798944
AT2G16800.1	CDX88803	AT5G22290.1	21798944
AT2G16800.1	CDX92368	AT5G22290.1	21798944
AT2G16800.1	CDY09128	AT5G22290.1	21798944
AT2G16800.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47481	Canola	plastid	92.41	93.17
CDY17509	Canola	extracellular	17.34	79.01
AT2G16800.1	Thale cress	plastid	78.59	77.96
CDX69110	Canola	plastid	68.29	69.61
PGSC0003DMT400015782	Potato	plastid	67.75	67.02
Solyc01g111620.2.1	Tomato	plastid	68.29	66.84
CDY52650	Canola	plastid	67.75	65.96
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.63	63.89
Solyc08g005980.2.1	Tomato	plastid	64.23	61.88
PGSC0003DMT400038459	Potato	plastid	63.41	61.42
VIT_18s0001g14840.t01	Wine grape	plastid	61.25	59.01
Os06t0116400-01	Rice	mitochondrion, plastid	56.64	56.95
CDX76312	Canola	cytosol	8.94	56.9
GSMUA_Achr1P07500_001	Banana	plastid	53.93	56.7
EER92833	Sorghum	plastid	54.47	55.68
Zm00001d027721_P001	Maize	plastid	53.39	55.34
Os03t0156700-01	Rice	mitochondrion	51.49	53.37
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	52.3	53.02
TraesCS4A01G033400.1	Wheat	mitochondrion	52.03	52.6
TraesCS4D01G271200.1	Wheat	plastid	52.3	52.59
EER89091	Sorghum	mitochondrion	53.39	52.25
GSMUA_AchrUn_...	Banana	plastid	42.01	50.32
TraesCS4A01G435600.1	Wheat	plastid	51.76	49.23
TraesCS7D01G044600.1	Wheat	plastid	51.76	48.97
TraesCS7A01G049500.1	Wheat	plastid	51.22	48.21
HORVU4Hr1G072520.2	Barley	plastid	50.68	41.28
CDY17508	Canola	extracellular	24.66	38.72

Protein Annotations

EnsemblPlants:CDY26789	EnsemblPlantsGene:GSBRNA2T00035722001	GO:A0A078GNG3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:CDY26789	ProteinID:CDY26789.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EB4E2A	UniProt:A0A078GNG3	MapMan:24.2.6.3	:	:

Description

BnaC09g09160DBnaC09g09160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNG3]

Coordinates

chrLK032194:+:229928..231521

Molecular Weight (calculated)

39059.1 Da

IEP (calculated)

10.194

GRAVY (calculated)

0.350

Length

369 amino acids

Sequence
(BLAST)

001: MDRLLQPPSS SILAPSKSQL RAPPLLLRVH RLDSPSLIPA SPRRVSSISC LFRHNPSPTT SPGSNQARNL SSSSPKADES KPNPGFLEQI VRSYEQRKTL
101: SAGTIILISA VVALLLNPIV APPAFASFQA AAKSSGAAVG GKLLRTEVLT SAWTGFFAGC LHTLSGPDHL AALAPLSIGR TRMESAAVGA LWGCGHDAGQ
201: LIFGLLFLLL KDRLHIEVIR TWGTRVVGLT LLVIGAMGIK EASEIPEPCV VSLENGEETD EKSSKKKKKI GFATFATGIV HGLQPDALMM VLPALALPSR
301: VAGAAFLIMF LLGTVIAMGS YTVFIGSCSE ALKEKVPRIT EKLTWASSLV AIGLGLAIIV SQFFGFSLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.