CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX92368
CDY09128
CDY35676
CDY41153
CDY46076
CDY48365
CDY63965

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	CDY46076	AT2G23420.1	21798944
AT2G16800.1	CDY63965	AT2G23420.1	21798944
AT2G16800.1	CDX67837	AT3G60600.1	21798944
AT2G16800.1	CDX71796	AT3G60600.1	21798944
AT2G16800.1	CDX89063	AT3G60600.1	21798944
AT2G16800.1	CDY41153	AT3G60600.1	21798944
AT2G16800.1	CDY48365	AT3G60600.1	21798944
AT2G16800.1	CDX70995	AT5G22290.1	21798944
AT2G16800.1	CDX88803	AT5G22290.1	21798944
AT2G16800.1	CDX92368	AT5G22290.1	21798944
AT2G16800.1	CDY09128	AT5G22290.1	21798944
AT2G16800.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037287.1-P	Field mustard	plastid	99.18	99.18
CDY26789	Canola	plastid	93.17	92.41
AT2G16800.1	Thale cress	plastid	80.33	79.03
CDY17509	Canola	extracellular	17.49	79.01
CDX69110	Canola	plastid	68.58	69.34
PGSC0003DMT400015782	Potato	plastid	67.49	66.22
Solyc01g111620.2.1	Tomato	plastid	68.03	66.05
CDY52650	Canola	plastid	68.31	65.96
GSMUA_Achr3P00650_001	Banana	mitochondrion	44.26	64.29
PGSC0003DMT400038459	Potato	plastid	63.93	61.42
Solyc08g005980.2.1	Tomato	plastid	63.93	61.1
VIT_18s0001g14840.t01	Wine grape	plastid	62.3	59.53
Os06t0116400-01	Rice	mitochondrion, plastid	57.92	57.77
CDX76312	Canola	cytosol	9.02	56.9
GSMUA_Achr1P07500_001	Banana	plastid	54.37	56.7
EER92833	Sorghum	plastid	55.74	56.51
Zm00001d027721_P001	Maize	plastid	54.1	55.62
Os03t0156700-01	Rice	mitochondrion	52.19	53.65
EER89091	Sorghum	mitochondrion	54.64	53.05
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	52.46	52.75
TraesCS4A01G033400.1	Wheat	mitochondrion	52.46	52.6
TraesCS4D01G271200.1	Wheat	plastid	52.46	52.32
TraesCS4A01G435600.1	Wheat	plastid	53.01	50.0
TraesCS7A01G049500.1	Wheat	plastid	53.01	49.49
GSMUA_AchrUn_...	Banana	plastid	41.53	49.35
TraesCS7D01G044600.1	Wheat	plastid	52.46	49.23
HORVU4Hr1G072520.2	Barley	plastid	50.82	41.06
CDY17508	Canola	extracellular	23.77	37.02

Protein Annotations

EnsemblPlants:CDY47481	EnsemblPlantsGene:GSBRNA2T00087534001	GO:A0A078ICB4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:CDY47481	ProteinID:CDY47481.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EF462B	UniProt:A0A078ICB4	MapMan:24.2.6.3	:	:

Description

BnaA09g08900DBnaA09g08900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICB4]

Coordinates

chrLK032718:+:77612..79144

Molecular Weight (calculated)

38817.9 Da

IEP (calculated)

10.381

GRAVY (calculated)

0.360

Length

366 amino acids

Sequence
(BLAST)

001: MDRLLQPPSS SILAPSKSHL RAPPLLLRVH RLDSPSLIPS SPRRVSSISC LFRHNPSPTA SNQARNLSSS SPKADESKPN PGFLERIVRS YEQRKKLSAG
101: TIILISAVVA LLLNPIVAPP ALASFQAAAK SSGAAVGGKL LRTEVLTSAW TGFFAGCLHT LSGPDHLAAL APLSIGRTRM ESAAVGALWG CGHDAGQLIF
201: GLLFLLLKDR LHIEVIRTWG TRVVGLTLLV IGAMGIKEAS EIPEPCVVAL ENGEETDEKS SKKKKKIGFA TFATGIVHGL QPDALMMVLP ALALPSRVAG
301: AAFLIMFLLG TVIAMGSYTV FIGSCSEALK EKVPRITEKL TWASSLVAIG LGLAIIVSQF FGFSLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.