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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 6
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G302400.1
TraesCS2A01G368500.1
TraesCS2B01G318300.2
TraesCS2B01G385700.2
TraesCS2D01G301100.1
TraesCS2D01G365300.2
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G16800.1 TraesCS2A01G302400.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS2B01G318300.2 AT2G23420.1 21798944
AT2G16800.1 TraesCS2D01G301100.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS4A01G354500.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS5B01G517900.3 AT2G23420.1 21798944
AT2G16800.1 TraesCS5D01G517600.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS2A01G368500.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS2B01G385700.2 AT3G60600.1 21798944
AT2G16800.1 TraesCS2D01G365300.2 AT3G60600.1 21798944
AT2G16800.1 TraesCS6A01G237600.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS6B01G266100.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS6D01G220300.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS7A01G300700.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS7D01G296400.1 AT3G60600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G272000.1 Wheat mitochondrion, plastid 95.34 95.6
TraesCS4D01G271200.1 Wheat plastid 95.34 94.82
Zm00001d027721_P001 Maize plastid 68.77 70.51
Os03t0156700-01 Rice mitochondrion 67.4 69.1
EER92833 Sorghum plastid 67.95 68.7
CDY17509 Canola extracellular 14.52 65.43
HORVU4Hr1G072520.2 Barley plastid 80.82 65.12
GSMUA_Achr3P00650_001 Banana mitochondrion 40.55 58.73
KRH39780 Soybean plastid 49.04 54.24
PGSC0003DMT400015782 Potato plastid 54.25 53.08
CDY47481 Canola plastid 52.6 52.46
Bra037287.1-P Field mustard plastid 52.6 52.46
Solyc01g111620.2.1 Tomato plastid 53.97 52.25
Bra034673.1-P Field mustard mitochondrion 12.88 52.22
CDY26789 Canola plastid 52.6 52.03
CDX76312 Canola cytosol 8.22 51.72
Bra011583.1-P Field mustard plastid 49.86 51.12
Solyc08g005980.2.1 Tomato plastid 53.42 50.91
CDX69110 Canola plastid 50.41 50.83
VIT_03s0038g02470.t01 Wine grape plastid 53.15 50.79
KRH24328 Soybean plastid 51.51 50.67
PGSC0003DMT400038459 Potato plastid 52.88 50.66
AT2G16800.1 Thale cress plastid 50.96 50.0
KRH51392 Soybean plastid 49.86 49.06
GSMUA_Achr1P07500_001 Banana plastid 47.12 49.0
VIT_18s0001g14840.t01 Wine grape plastid 50.96 48.56
KRH60695 Soybean plastid 50.41 48.55
CDY52650 Canola plastid 50.41 48.55
TraesCS4A01G435600.1 Wheat plastid 50.68 47.68
AT4G35080.3 Thale cress plastid 49.86 46.79
TraesCS7A01G049500.1 Wheat plastid 49.59 46.17
GSMUA_AchrUn_... Banana plastid 37.53 44.48
CDY17508 Canola extracellular 20.27 31.49
Protein Annotations
EnsemblPlants:TraesCS4A01G033400.1EnsemblPlantsGene:TraesCS4A01G033400PANTHER:PTHR33876PANTHER:PTHR33876:SF2PFAM:PF13386SEG:seg
TMHMM:TMhelixMapMan:24.2.6.3::::
Description
No Description!
Coordinates
chr4A:+:25694184..25696942
Molecular Weight (calculated)
37719.4 Da
IEP (calculated)
9.805
GRAVY (calculated)
0.513
Length
365 amino acids
Sequence
(BLAST)
001: MERLISRTAV SPAQPRIHLP GRSPFLTTRR AASASAGAGS AAPWTRLCAQ PPRLGAAVAA AARHDGASAP APVEEVAAAA AAGPPWKLLG SLLPKASTAA
101: LVLLMTLTAS ALHSSIPHPA YASAQPVIKS GGLLSAELLS SGWAGFFAGC LHTLSGPDHL VALAPLSIGR SRLESGLVGA LWGCGHDAGQ IIFGLLFLLL
201: KDRLHIEVLR IWGTRVVGLT LLMIGATGIR EASEVQESGL ILEGVDMNGS EPLQQAPAVA PRKKKVGFTT FATGVIHGLQ PDALLMVLPA LALPSRFAGA
301: AYLGMFLVGT VFSMGSYTAF VGSCSEALKD RIPKITEKLT WAASLVAVCL GLALLVGQFF GFTLY
Best Arabidopsis Sequence Match ( AT4G35080.1 )
(BLAST)
001: MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ
101: RKTLSTGTVI LISAVAVLLL NPLLAPPAFA SFQTAAKSGW LTSAWTGFLA GCLHTLSGPD HLAALAPLSI GRSKMESAAV GALWGCGHDA GQVIFGLLFL
201: LLKDRLHIEV LQTWGTRIVG LTLVIIGAMG IKEASEIPEP CVALETDISM VSTEKEALPL PKKKKIGFAT FATGVVHGLQ PDALMIVLPA LALPSRLAGS
301: AFLIMFLVGT VIAMGSYTAF IGSCSEALKE KVPRITEKLT WVSSLVAIGL GLGIVISPFF GFSLY
Arabidopsis Description
High-affinity nickel-transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JM82]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.