Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH24328 | Soybean | plastid | 87.58 | 77.9 |
KRH51392 | Soybean | plastid | 75.45 | 67.12 |
KRH60695 | Soybean | plastid | 75.15 | 65.44 |
GSMUA_Achr3P00650_001 | Banana | mitochondrion | 49.7 | 65.08 |
VIT_03s0038g02470.t01 | Wine grape | plastid | 72.42 | 62.57 |
PGSC0003DMT400015782 | Potato | plastid | 70.3 | 62.2 |
Solyc01g111620.2.1 | Tomato | plastid | 70.3 | 61.54 |
AT2G16800.1 | Thale cress | plastid | 66.36 | 58.87 |
Solyc08g005980.2.1 | Tomato | plastid | 68.18 | 58.75 |
PGSC0003DMT400038459 | Potato | plastid | 66.97 | 58.01 |
Os06t0116400-01 | Rice | mitochondrion, plastid | 62.73 | 56.4 |
GSMUA_Achr1P07500_001 | Banana | plastid | 58.79 | 55.27 |
Zm00001d027721_P001 | Maize | plastid | 57.88 | 53.65 |
Bra034673.1-P | Field mustard | mitochondrion | 14.55 | 53.33 |
EER89091 | Sorghum | mitochondrion | 60.3 | 52.79 |
Os03t0156700-01 | Rice | mitochondrion | 56.36 | 52.25 |
EER92833 | Sorghum | plastid | 56.67 | 51.8 |
AT4G35080.3 | Thale cress | plastid | 60.91 | 51.67 |
TraesCS4B01G272000.1 | Wheat | mitochondrion, plastid | 54.55 | 49.45 |
TraesCS4D01G271200.1 | Wheat | plastid | 54.55 | 49.05 |
TraesCS4A01G033400.1 | Wheat | mitochondrion | 54.24 | 49.04 |
CDX76312 | Canola | cytosol | 8.48 | 48.28 |
TraesCS7A01G049500.1 | Wheat | plastid | 56.97 | 47.96 |
TraesCS7D01G044600.1 | Wheat | plastid | 56.67 | 47.95 |
TraesCS4A01G435600.1 | Wheat | plastid | 56.36 | 47.94 |
GSMUA_AchrUn_... | Banana | plastid | 43.64 | 46.75 |
HORVU4Hr1G072520.2 | Barley | plastid | 54.85 | 39.96 |
Protein Annotations
EMBL:ACUP02005959 | EnsemblPlants:KRH39780 | EnsemblPlantsGene:GLYMA_09G218700 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
PANTHER:PTHR33876 | PANTHER:PTHR33876:SF2 | PFAM:PF13386 | ProteinID:KRH39780 | ProteinID:KRH39780.1 | SEG:seg |
TMHMM:TMhelix | UniParc:UPI0006EDDC9F | UniProt:A0A0R0IKP3 | MapMan:24.2.6.3 | : | : |
Description
hypothetical protein
Coordinates
chr9:-:44196778..44198411
Molecular Weight (calculated)
34876.1 Da
IEP (calculated)
8.234
GRAVY (calculated)
0.620
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: ILVNALFLHL NFFQHETPPP PLSYSPPKTL PSLIPSPSPL TPNHFQKPPK AITARTFAIL SALVLLLIQP AFAPAAFATF QNAAKTSGPA AAAVGGKLIR
101: TELLSSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTQMES AAVGALWGCG HDAGQVIFGL IFLLLKDRLH IEIIQTWGTR VVGLTLLVIG AMGIKEASEV
201: PILCVALENG ECDVSVYESR DSNPVVGKKK IGFATFATGI VHGLEPDALM MVLPALALPS RLAGAAFLIM FLLGTVVAMG SYTVFIGSCS EALKDRVPRI
301: TEKLTWASSL VAIALGFAII TSQFFGFSLY
101: TELLSSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTQMES AAVGALWGCG HDAGQVIFGL IFLLLKDRLH IEIIQTWGTR VVGLTLLVIG AMGIKEASEV
201: PILCVALENG ECDVSVYESR DSNPVVGKKK IGFATFATGI VHGLEPDALM MVLPALALPS RLAGAAFLIM FLLGTVVAMG SYTVFIGSCS EALKDRVPRI
301: TEKLTWASSL VAIALGFAII TSQFFGFSLY
001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.